Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0657
(509 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g80780.2 68414.m09478 CCR4-NOT transcription complex protein,... 79 2e-15
At1g80780.1 68414.m09477 CCR4-NOT transcription complex protein,... 79 2e-15
At2g32070.1 68415.m03919 CCR4-NOT transcription complex protein,... 74 5e-14
At1g15920.2 68414.m01910 CCR4-NOT transcription complex protein,... 68 3e-12
At1g15920.1 68414.m01909 CCR4-NOT transcription complex protein,... 68 3e-12
At5g10960.1 68418.m01273 CCR4-NOT transcription complex protein,... 62 2e-10
At3g44260.1 68416.m04750 CCR4-NOT transcription complex protein,... 44 5e-05
At1g58370.1 68414.m06640 glycosyl hydrolase family 10 protein / ... 28 3.2
At2g03690.1 68415.m00328 coenzyme Q biosynthesis Coq4 family pro... 28 4.2
At4g29090.1 68417.m04163 reverse transcriptase, putative / RNA-d... 27 5.5
At1g61450.1 68414.m06924 expressed protein contains similarity t... 27 5.5
At3g44240.1 68416.m04747 CCR4-NOT transcription complex protein,... 27 7.3
At3g15600.1 68416.m01976 hypothetical protein low similarity to ... 27 7.3
At1g50710.1 68414.m05702 expressed protein 27 7.3
At5g35910.1 68418.m04312 3'-5' exonuclease domain-containing pro... 27 9.7
At4g35870.1 68417.m05094 expressed protein 27 9.7
At4g17280.1 68417.m02597 auxin-responsive family protein similar... 27 9.7
At1g51760.1 68414.m05833 IAA-amino acid hydrolase 3 / IAA-Ala hy... 27 9.7
>At1g80780.2 68414.m09478 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 274
Score = 79.0 bits (186), Expect = 2e-15
Identities = 42/84 (50%), Positives = 53/84 (63%)
Frame = -2
Query: 508 LLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRYFLME 329
LLKLLT QNLP + DFF+ + +YFPTVYD+K+LMK C +L GGL ++A+ LE+
Sbjct: 170 LLKLLTCQNLPDSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVE----- 224
Query: 328 TLKVRVDICTDLELHSLLTPTTSR 257
RV IC SLLT T R
Sbjct: 225 ----RVGICHQAGSDSLLTSCTFR 244
>At1g80780.1 68414.m09477 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 274
Score = 79.0 bits (186), Expect = 2e-15
Identities = 42/84 (50%), Positives = 53/84 (63%)
Frame = -2
Query: 508 LLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRYFLME 329
LLKLLT QNLP + DFF+ + +YFPTVYD+K+LMK C +L GGL ++A+ LE+
Sbjct: 170 LLKLLTCQNLPDSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVE----- 224
Query: 328 TLKVRVDICTDLELHSLLTPTTSR 257
RV IC SLLT T R
Sbjct: 225 ----RVGICHQAGSDSLLTSCTFR 244
>At2g32070.1 68415.m03919 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 275
Score = 74.1 bits (174), Expect = 5e-14
Identities = 40/84 (47%), Positives = 51/84 (60%)
Frame = -2
Query: 508 LLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRYFLME 329
LLKLLT QNLP + FFE + +YFP VYD+K+LMK C +L GGL ++A+ L++
Sbjct: 171 LLKLLTCQNLPETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVE----- 225
Query: 328 TLKVRVDICTDLELHSLLTPTTSR 257
RV IC SLLT T R
Sbjct: 226 ----RVGICHQAGSDSLLTSCTFR 245
>At1g15920.2 68414.m01910 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 286
Score = 68.1 bits (159), Expect = 3e-12
Identities = 28/55 (50%), Positives = 42/55 (76%)
Frame = -2
Query: 508 LLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELR 344
LLKLL+ + LP E +DFF+++ +FP VYD+KYLM C NL GGL+++A+ L ++
Sbjct: 180 LLKLLSGKELPEEISDFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVK 234
>At1g15920.1 68414.m01909 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 286
Score = 68.1 bits (159), Expect = 3e-12
Identities = 28/55 (50%), Positives = 42/55 (76%)
Frame = -2
Query: 508 LLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELR 344
LLKLL+ + LP E +DFF+++ +FP VYD+KYLM C NL GGL+++A+ L ++
Sbjct: 180 LLKLLSGKELPEEISDFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVK 234
>At5g10960.1 68418.m01273 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
transcription complex, subunit 8 (CAF1-like protein,
CALIFp) [Homo sapiens]
Length = 277
Score = 62.5 bits (145), Expect = 2e-10
Identities = 35/79 (44%), Positives = 47/79 (59%)
Frame = -2
Query: 508 LLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRYFLME 329
L+KLLT + LP ++ DFF+ L +YFPTVYD+K+LM C L GGL +A+ + +
Sbjct: 170 LVKLLTCKELPLKQADFFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVE----- 224
Query: 328 TLKVRVDICTDLELHSLLT 272
RV IC SLLT
Sbjct: 225 ----RVGICHQAGSDSLLT 239
>At3g44260.1 68416.m04750 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
transcription complex, subunit 8 (CAF1-like protein,
CALIFp) [Homo sapiens]
Length = 280
Score = 44.4 bits (100), Expect = 5e-05
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Frame = -2
Query: 508 LLKLLTDQNLPHEENDFFERLRLYF-PTVYDVKYLMKLC-KNLKGGLQEVADQLEL 347
L+K+LT + LP +F +R+ F VYDVK++MK C + L GGL VA LE+
Sbjct: 178 LMKILTRRELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEV 233
>At1g58370.1 68414.m06640 glycosyl hydrolase family 10 protein /
carbohydrate-binding domain-containing protein similar
to (1,4)-beta-xylan endohydrolase GI:5306060 from
[Triticum aestivum] ; contains Pfam profiles PF00331:
Glycosyl hydrolase family 10, PF02018: Carbohydrate
binding domain
Length = 917
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -1
Query: 380 WLTRSCRSVGIEIFFDGNIESTSGHLYGLGAPFTTNANNFQDNV 249
W RSC+ V + DG I SG ++ T N N Q +
Sbjct: 212 WSGRSCKIVLHDSMADGKIVPESGKVFASATERTQNWNGIQQEI 255
>At2g03690.1 68415.m00328 coenzyme Q biosynthesis Coq4 family
protein / ubiquinone biosynthesis Coq4 family protein
contains Pfam profile PF05019: Coenzyme Q (ubiquinone)
biosynthesis protein Coq4
Length = 226
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +3
Query: 252 VILEVVGVSSEWSSKSVQMSTRTFNVSIKKYLNSN*SATSCKPPLRFLQS 401
++LE V SE + + TF + K++ S + +PP+RF+++
Sbjct: 64 ILLERPRVVSEQVGHAWDLPENTFGAAYAKFMGSRNFSPDDRPPVRFMET 113
>At4g29090.1 68417.m04163 reverse transcriptase, putative /
RNA-dependent DNA polymerase, putative similar to
reverse transcriptase [Arabidopsis thaliana] GI:976278;
contains Pfam profile PF00075: RNase H
Length = 575
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -2
Query: 367 VADQLELRYFLMETLKVRVDICTDLELHSLLTPTTSRITWIVET 236
VA L R+ E+ +R C + H L T +R+TW + +
Sbjct: 280 VAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISS 323
>At1g61450.1 68414.m06924 expressed protein contains similarity to
myosin II GI:1763303 from [Schizosaccharomyces pombe];
expression supported by MPSS
Length = 118
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/72 (20%), Positives = 32/72 (44%)
Frame = -2
Query: 358 QLELRYFLMETLKVRVDICTDLELHSLLTPTTSRITWIVETHLDLNCLAKEFNSVVTSVS 179
++E L E R + + E+ L++ T + ++ CL E + ++T +
Sbjct: 44 EIESSLSLKEPELTRSFLASQFEISGLISVTADSRNSLKLLEDEICCLRSEHSELITKTN 103
Query: 178 YQGIEINNNLYL 143
+ + INN + L
Sbjct: 104 REAVNINNCIVL 115
>At3g44240.1 68416.m04747 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 239
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -2
Query: 508 LLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKG--GLQEVADQLEL 347
LLK T + LP F + + +VYD+K + C+ L GL+ +A + L
Sbjct: 137 LLKGFTGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGLSSRLGLETLAHEFGL 192
>At3g15600.1 68416.m01976 hypothetical protein low similarity to KED
[Nicotiana tabacum] GI:8096269; contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 591
Score = 27.1 bits (57), Expect = 7.3
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = -2
Query: 427 VYDVKYLMKLCKNLKGGLQEVADQ--LELRYFLMETLKV-RVDICTDLE 290
V D+ YLMK C + G Q+V + L Y E + V R + C D+E
Sbjct: 142 VKDIFYLMKKCNGVVGP-QKVFPSFVMPLEYLAFEAIPVLRENFCEDIE 189
>At1g50710.1 68414.m05702 expressed protein
Length = 423
Score = 27.1 bits (57), Expect = 7.3
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = -2
Query: 418 VKYLMKLCKNLKGGLQEVADQLELRYFLMETLKVRVDICTDLEL-HSLLTPTTSRITWIV 242
VK L +NL + ++ DQLE + V + +DL+L ++ R +
Sbjct: 2 VKALQGAAQNLPADVNQLIDQLERHCLAPDGSLVTKSVYSDLQLAREEMSRERLRYLEAM 61
Query: 241 ETHLDLNCLAKEFNSVVTSVSYQGIEINNNLY 146
+ + + +E+ ++ ++ GI LY
Sbjct: 62 AIYCEAVAMVEEYQQAISVANHGGIRDVQGLY 93
>At5g35910.1 68418.m04312 3'-5' exonuclease domain-containing
protein / helicase and RNase D C-terminal
domain-containing protein / HRDC domain-containing
protein low similarity to SP|Q01780
Polymyositis/scleroderma autoantigen 2 {Homo sapiens};
contains Pfam profiles PF00570: HRDC domain, PF01612:
3'-5' exonuclease
Length = 838
Score = 26.6 bits (56), Expect = 9.7
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -2
Query: 421 DVKYLMKLCKNLKGGLQEVA-DQLELRYFLMETLKVRVDICTDLELHSLLT 272
D YL+ + +K LQ +A D L+E K D+CT L LLT
Sbjct: 381 DTHYLLYIYDLIKLELQRMAKDDAHTDSPLLEVYKRSYDVCTQLYEKELLT 431
>At4g35870.1 68417.m05094 expressed protein
Length = 817
Score = 26.6 bits (56), Expect = 9.7
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = -2
Query: 400 LCKNLKGGLQEVADQLELRY-FLMETLKVRVDICTDLELHSLLTPTTSRITWIVETHLDL 224
L KNL E D L+Y + V +D+C +L + L ITW+V +D
Sbjct: 212 LPKNLGSDRVEFEDCFRLKYPGKVYKFIVPMDLCALDDLATELVRVRDEITWLV-AKMDS 270
Query: 223 NCLAKEFNSV 194
L E+ +V
Sbjct: 271 RLLPDEYENV 280
>At4g17280.1 68417.m02597 auxin-responsive family protein similar to
auxin-induced protein AIR12 (GI:11357190) [Arabidopsis
thaliana]
Length = 297
Score = 26.6 bits (56), Expect = 9.7
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 297 SVQMSTRTFNVSIKKY-LNSN*SATSCKPPLRFLQSFIRYLTSYTVG 434
S+ M+T +F + KY +SN SC L FL SF+ Y + G
Sbjct: 22 SISMTTLSFAQTCSKYKFSSNNVFDSCND-LPFLDSFLHYTYESSTG 67
>At1g51760.1 68414.m05833 IAA-amino acid hydrolase 3 / IAA-Ala
hydrolase 3 (IAR3) identical to IAA-Ala hydrolase (IAR3)
[Arabidopsis thaliana] GI:3421384
Length = 440
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = -2
Query: 484 NLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELR 344
N+ + DF E + +FP + K L + KN+ G + + + +E++
Sbjct: 315 NMCNATVDFIEEEKPFFPPTVNDKALHQFFKNVSGDMLGIENYVEMQ 361
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,456,422
Number of Sequences: 28952
Number of extensions: 179766
Number of successful extensions: 484
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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