Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0656
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    28   1.0  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    27   1.4  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    27   1.8  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    25   5.5  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    25   7.2  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    25   7.2  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    25   9.5  

>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
 Frame = +1

Query: 286 LAVKGNPNVDEI------KEKLIEHVIDKRDRNGQFMFPRLRHLLVS 408
           L V+ N NVDEI      ++ +++ + D RDR  +   PR+ HL V+
Sbjct: 582 LTVENNVNVDEIENYEEVRDSILKKLSDLRDRPKRSEKPRIYHLDVA 628


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -1

Query: 241 SSNVLTVSVLMNSKSGYLLDSS---LSHKCLLTRTTVNKEEHVLVYIK*TN*LK*TN 80
           SS V T+S L   K  YL+ S    +  K + + TT+ K      YI  TN +  TN
Sbjct: 519 SSTVDTISKLNTDKDNYLIKSKKEPIQQKSVSSETTLVKPSSTSSYIDTTNNVLKTN 575


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 377 MNCPFLSRLSITCSMSFSLISSTF 306
           +N PF  +L ITC  S+  + STF
Sbjct: 126 VNWPFRKKLKITCVYSYVALCSTF 149


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -3

Query: 254 FPMRVQQCSDCVSFDEFE-IWIS 189
           FP  V +  +CV +DE E +WIS
Sbjct: 429 FPYSVLEIRECVRYDEDEPLWIS 451


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 66  CYIQ*FVYFS*FVYLIYTRT 125
           C++Q F YF  F +L Y  T
Sbjct: 277 CFVQFFAYFGWFPFLFYITT 296


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = -3

Query: 401 SKCRSLGNMNCPFLSRLSITCSMSFSLISSTFGLPFTASSTLMIS*FRLFPMRV 240
           ++C  L ++ CP  + L   CS+  +LI+ TF     A++ ++ +  ++F   V
Sbjct: 457 NRCLQLTDV-CPPRASLETLCSLCVTLINDTFEPVRMATTNVLATLVQIFSQPV 509


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 398 YSSHAGATTLGMSTCVFGLKTTSS*LMLFTEVDRL--QRVIYSSRAP 532
           Y  H     +GM  C  G +  +S  + FT +D+L  QR +  S  P
Sbjct: 395 YVEHLNNAEIGMLLCDEGHRLKNSDSLTFTALDKLNVQRRVILSGTP 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,355
Number of Sequences: 5004
Number of extensions: 41036
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)