Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0656
         (544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48669| Best HMM Match : DUF1298 (HMM E-Value=0.0015)                46   3e-05
SB_30985| Best HMM Match : DUF1450 (HMM E-Value=1.5)                   34   0.086
SB_59651| Best HMM Match : UPF0089 (HMM E-Value=5.8e-06)               30   1.4  
SB_35883| Best HMM Match : TolA (HMM E-Value=0.11)                     29   3.2  
SB_22790| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29)                27   7.5  
SB_12839| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  

>SB_48669| Best HMM Match : DUF1298 (HMM E-Value=0.0015)
          Length = 529

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 22/89 (24%), Positives = 43/89 (48%)
 Frame = +1

Query: 205 NSSKLTQSEHCWTRIGNNRNQEIINVLLAVKGNPNVDEIKEKLIEHVIDKRDRNGQFMFP 384
           N   L + +  W +     N+ II+  + ++G PNV E+K  + E ++ + +   + + P
Sbjct: 95  NCIPLKEDDAVWQQ-ETPTNRHIIHAFMLMEGEPNVAELKSIVCERLVFRVNDQNERICP 153

Query: 385 RLRHLLVSCWGNYAWDVNVRFRFENHFIV 471
           R+   +    G Y W  + +F  + HF V
Sbjct: 154 RMTQAIKRYHGVYVWQEDCQFSIDKHFCV 182


>SB_30985| Best HMM Match : DUF1450 (HMM E-Value=1.5)
          Length = 599

 Score = 33.9 bits (74), Expect = 0.086
 Identities = 16/71 (22%), Positives = 32/71 (45%)
 Frame = +1

Query: 262 NQEIINVLLAVKGNPNVDEIKEKLIEHVIDKRDRNGQFMFPRLRHLLVSCWGNYAWDVNV 441
           N  + ++   V+G    +EI++ + E+ +   +    F FP+LR   V     +AW    
Sbjct: 132 NVAVTSIFFLVEGQITQEEIRDFIDENWLYYCNTKKNFRFPKLREFAVKICSGFAWKPIA 191

Query: 442 RFRFENHFIVA 474
            F+  N  + +
Sbjct: 192 NFQTRNFILTS 202


>SB_59651| Best HMM Match : UPF0089 (HMM E-Value=5.8e-06)
          Length = 425

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +1

Query: 310 VDEIKEKLIEHVIDKRDRNGQFMFPRLRHLLVSCWGNYAWDVNVRFRFENH 462
           + E +E +   ++D R+  G+  FPR R ++   +  Y +  +  F  E+H
Sbjct: 80  MSEFREVVRTRLVDSRNSKGELSFPRARKMVRPGYFQYFFQDDPDFDIEDH 130


>SB_35883| Best HMM Match : TolA (HMM E-Value=0.11)
          Length = 391

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 259 RNQEIINVLLAVKGNPNVDEIKEKLIEHVIDKRDR 363
           +NQ    ++   +   NVDE ++K+++ +IDK+ R
Sbjct: 176 KNQNKKRLVEMAQRKTNVDENRQKIVQQIIDKQQR 210


>SB_22790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 422

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 376 MFPRLRHLLVSCWG-NYAW-DVNVRFRFENHFIV 471
           MFP  RH    CWG N  W ++NV F+    FI+
Sbjct: 326 MFPPYRHEPRPCWGPNSGWPELNVTFKLAIIFIL 359


>SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29)
          Length = 420

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = +1

Query: 250 GNNRNQEIINVLLAVKGNPNVDEIKEKLIEHVIDKRDRNGQFMFPRLRHLL 402
           G+  + E+ +V+ ++  NP   E+K+ + E  +D +D NG+  FP    ++
Sbjct: 305 GSISSSELAHVMRSLGQNPTEQELKDMIAE--VD-QDDNGEIDFPEFLQMV 352


>SB_12839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 205 SKSGYLLDSSLSHKCLLTRTTVNKEEHVLVYI 110
           ++SGY+L  SLSH   L  +  NK+E V  +I
Sbjct: 30  TQSGYILKCSLSHAITLNFSLENKKEVVGSFI 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,884,454
Number of Sequences: 59808
Number of extensions: 301386
Number of successful extensions: 576
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)