Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0656
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC090999-12|ABD63206.1|  257|Caenorhabditis elegans Hypothetical...    28   3.8  
Z27079-5|CAA81598.2|  237|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AL032627-1|CAB63352.2|  444|Caenorhabditis elegans Hypothetical ...    27   8.7  
AL021503-7|CAI79271.1|  277|Caenorhabditis elegans Hypothetical ...    27   8.7  
AL021503-6|CAA16424.2|  459|Caenorhabditis elegans Hypothetical ...    27   8.7  
AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AC090999-12|ABD63206.1|  257|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.23 protein.
          Length = 257

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -1

Query: 319 FHRRSDYLSRPVVR**SPDSDYFRCVSSNVLTVSVLMN 206
           F+++S+YL R ++R    D D+F  +S  ++ +  ++N
Sbjct: 171 FNKQSEYLDRFMLRSNYLDQDFFENISEQIIKIEGIVN 208


>Z27079-5|CAA81598.2|  237|Caenorhabditis elegans Hypothetical
           protein T05G5.5 protein.
          Length = 237

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +1

Query: 286 LAVKGNPNVDEIKEKLIEHVIDKRDRN 366
           + +  N N+DE++EK ++HVI + D++
Sbjct: 185 IVIDNNGNIDELREK-VKHVIAQLDKS 210


>AL032627-1|CAB63352.2|  444|Caenorhabditis elegans Hypothetical
           protein Y41C4A.1 protein.
          Length = 444

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 181 CPVDIQISNSSKLTQSEHCWTRIGNNRNQEIINV 282
           CP D  ISN   +  ++    ++ NN NQE+ N+
Sbjct: 128 CP-DYGISNGEMMNMNKDAMEQLKNNSNQEVNNL 160


>AL021503-7|CAI79271.1|  277|Caenorhabditis elegans Hypothetical
           protein Y68A4A.10b protein.
          Length = 277

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 416 PQHETSKCRSLGNMNCPFLSRLSITCSMS 330
           P +  +KC +   MN P  S LS+ C+++
Sbjct: 87  PMNAAAKCTATTGMNSPGCSTLSVKCTIN 115


>AL021503-6|CAA16424.2|  459|Caenorhabditis elegans Hypothetical
           protein Y68A4A.10a protein.
          Length = 459

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 416 PQHETSKCRSLGNMNCPFLSRLSITCSMS 330
           P +  +KC +   MN P  S LS+ C+++
Sbjct: 87  PMNAAAKCTATTGMNSPGCSTLSVKCTIN 115


>AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical
           protein T21D12.11 protein.
          Length = 709

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 202 SNSSKLTQSEHCWTRIGNNR-NQEIINVLLAVKGN 303
           SN++ L+ S H  +   NN  N  ++N  L V GN
Sbjct: 132 SNTNNLSSSSHSMSGSNNNNSNNNVVNNYLTVYGN 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,904,902
Number of Sequences: 27780
Number of extensions: 229916
Number of successful extensions: 570
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)