Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0656
         (544 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44580.1 68415.m05548 zinc finger (C3HC4-type RING finger) fa...    29   2.0  
At4g32500.1 68417.m04626 potassium channel protein, putative sim...    29   2.7  
At2g29190.1 68415.m03548 pumilio/Puf RNA-binding domain-containi...    29   2.7  
At4g10410.1 68417.m01709 hypothetical protein                          28   3.5  
At2g43795.1 68415.m05444 hypothetical protein                          28   4.6  
At2g29200.1 68415.m03549 pumilio/Puf RNA-binding domain-containi...    28   4.6  
At2g29140.1 68415.m03542 pumilio/Puf RNA-binding domain-containi...    28   4.6  
At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) simi...    27   8.1  

>At2g44580.1 68415.m05548 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 624

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -1

Query: 319 FHRRSDYLSRPVVR**SPDSDYFRCVSSNVLTVSVLMNSKSGYLLDSSL 173
           FH+R D+ +  V     PD D   C  S    +  + NS S +L+  S+
Sbjct: 47  FHQRYDFEAFGVTLRGLPDEDAVLCTKSKTYAIKFVGNSNSMFLIPPSI 95


>At4g32500.1 68417.m04626 potassium channel protein, putative
           similar to potassium channel [Solanum tuberosum]
           gi|1514649|emb|CAA60016; similar to AKT1 [Arabidopsis
           thaliana] gi|563112|gb|AAA96810; member of the 1 pore, 6
           transmembrane (1P/6TM- Shaker-type) K+ channel family,
           PMID:11500563
          Length = 880

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = -2

Query: 369 SIPISLVNNVLYEFFFDFIDVRITFHGQ*YVNDLLIPIISD 247
           S+P ++ +++ +  F++ +D    FHG    NDLL  ++S+
Sbjct: 373 SLPKAIRSSISHYLFYEVVDKTYLFHG--ISNDLLFQLVSE 411


>At2g29190.1 68415.m03548 pumilio/Puf RNA-binding domain-containing
           protein 
          Length = 972

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 242 VQQCSDCVSFDEFEIWISTGQQSKP*MSAHTYNCK 138
           VQ+C +CV  +  E  IST   +   +S H Y C+
Sbjct: 760 VQKCIECVPEENIEFIISTFFGNVVTLSTHPYGCR 794


>At4g10410.1 68417.m01709 hypothetical protein
          Length = 263

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 373 FMFPRLRHLLVSCWGNYAWDVNVR 444
           F+F  L HL +  W +Y W+V V+
Sbjct: 217 FIFNHLEHLTLPVWDDYPWNVLVQ 240


>At2g43795.1 68415.m05444 hypothetical protein
          Length = 170

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 18/69 (26%), Positives = 35/69 (50%)
 Frame = +1

Query: 313 DEIKEKLIEHVIDKRDRNGQFMFPRLRHLLVSCWGNYAWDVNVRFRFENHFIVANAVYRG 492
           +E+K++ +E   DK  R  +      R + +S   NY+ D++ + R E+  I +  + RG
Sbjct: 36  EELKKQEVEADTDKLMREYRAQLDAERAMKLSKGRNYSSDISRKGRRESSQIESAEIPRG 95

Query: 493 RPVTESNIQ 519
           R     +I+
Sbjct: 96  RKAKRESIR 104


>At2g29200.1 68415.m03549 pumilio/Puf RNA-binding domain-containing
           protein similar to BPM [Hordeum vulgare] GI:20513851
          Length = 968

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 242 VQQCSDCVSFDEFEIWISTGQQSKP*MSAHTYNCK 138
           VQ+C +CV  +  E  IST       +S H Y C+
Sbjct: 756 VQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCR 790


>At2g29140.1 68415.m03542 pumilio/Puf RNA-binding domain-containing
           protein 
          Length = 964

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 242 VQQCSDCVSFDEFEIWISTGQQSKP*MSAHTYNCK 138
           VQ+C +CV  +  E  IST       +S H Y C+
Sbjct: 752 VQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCR 786


>At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) similar
           to ribosomal protein S19 GB:445612 [Solanum tuberosum]
           and similar to ribosomal protein S24 GB:4506703 [Homo
           sapiens]
          Length = 133

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 256 NRNQEIINVLLAVKGNPNVDEIKEKLIEHVIDKRDRNGQFMFPRLRH 396
           +R Q +I+VL   + N +  E+KEKL   + + +D N  F+F    H
Sbjct: 20  SRKQFVIDVLHPGRANVSKAELKEKL-ARMYEVKDPNAIFVFKFRTH 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,912,449
Number of Sequences: 28952
Number of extensions: 202459
Number of successful extensions: 487
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)