Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0654
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   2.9  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   5.0  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   8.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 150  YSHTVGILHCDPLDDLITQYLDVTWITFRALVRRH 46
            YSH + +   DP++ +   YLD  ++ F A  RRH
Sbjct: 925  YSHLIPVYSVDPMEKICDAYLD-QYLWFEA-DRRH 957


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 319  PSGWERLRL*RAWVQACLCSLFRLLWSSF 233
            P G  +L    +W++ C+ S+F + W SF
Sbjct: 1404 PRGCYQLGPVLSWLKRCVISIFIVFWISF 1432


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
 Frame = +2

Query: 323  LRKLKM*SLKTSKVENNRRVRD--LHARSIVMLSVRLRVVVK---IGRRTVPQKTRKELR 487
            +++++M +LKT K  NN R  +  LH +  V+   +  + +K   +  +T P  T K++R
Sbjct: 1910 IKQIEMFALKTQKDSNNHREENLQLHRQLGVLQKEKKDLELKLFDLDLKTYPISTSKDVR 1969


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,822,435
Number of Sequences: 5004
Number of extensions: 30620
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)