Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0653
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110484-27|CAI46626.1|  397|Caenorhabditis elegans Hypothetical...    30   1.5  
AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical...    27   8.1  

>AL110484-27|CAI46626.1|  397|Caenorhabditis elegans Hypothetical
           protein Y38E10A.28 protein.
          Length = 397

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 133 LNITII-LSCVEFY*VLFKSSNYFNLFIKKKKKNSR 29
           +N+ I+ L+CV  Y +LF SS   +L+  + K NSR
Sbjct: 1   MNVAILALNCVSLYFLLFLSSFAIDLYTLETKNNSR 36


>AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical
           protein C15F1.1 protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 133 LNITIILSCVEFY*VLFKSSNYFNLFIKKKKKNSRLVLSL 14
           LNI +++  +  +  L  +SN FNL  KKKK+  R   S+
Sbjct: 37  LNIQLLIVHLTIFTGLHPNSNKFNLKWKKKKETQRKQCSI 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,995,039
Number of Sequences: 27780
Number of extensions: 158270
Number of successful extensions: 210
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)