Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0652
         (607 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q13951 Cluster: Core-binding factor subunit beta; n=42;...   152   5e-36
UniRef50_Q4H3S2 Cluster: Core-binding factor, b subunit; n=1; Ci...   142   6e-33
UniRef50_UPI0000E24525 Cluster: PREDICTED: hypothetical protein ...    90   3e-17
UniRef50_UPI000155C339 Cluster: PREDICTED: similar to core-bindi...    66   6e-10
UniRef50_Q4RCC9 Cluster: Chromosome undetermined SCAF19216, whol...    49   1e-04
UniRef50_A4KUC1 Cluster: Tlm Orf16; n=9; Bacteria|Rep: Tlm Orf16...    38   0.18 
UniRef50_Q4P6A9 Cluster: Putative uncharacterized protein; n=1; ...    38   0.24 
UniRef50_Q034X9 Cluster: Predicted transcriptional regulator; n=...    33   4.0  
UniRef50_A6S9B3 Cluster: Putative uncharacterized protein; n=1; ...    33   4.0  
UniRef50_A6NUK3 Cluster: Putative uncharacterized protein; n=1; ...    32   9.2  

>UniRef50_Q13951 Cluster: Core-binding factor subunit beta; n=42;
           Eumetazoa|Rep: Core-binding factor subunit beta - Homo
           sapiens (Human)
          Length = 182

 Score =  152 bits (369), Expect = 5e-36
 Identities = 68/126 (53%), Positives = 92/126 (73%), Gaps = 8/126 (6%)
 Frame = +3

Query: 249 MPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGT 428
           MPRVVPDQ++KFE+++ F++LSRE E++YTG+RDRP EERQ RF + CR+G +EIAF  T
Sbjct: 1   MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVAT 60

Query: 429 GTNLQLVFDHSPY--------NNRGCDFQKENGKAHIVSRFIMNGVCVRWRGWIDLERLD 584
           GTNL L F  + +        +    D ++E GK ++ +  I+NGVCV W+GWIDL+RLD
Sbjct: 61  GTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLD 120

Query: 585 GAGCLE 602
           G GCLE
Sbjct: 121 GMGCLE 126


>UniRef50_Q4H3S2 Cluster: Core-binding factor, b subunit; n=1; Ciona
           intestinalis|Rep: Core-binding factor, b subunit - Ciona
           intestinalis (Transparent sea squirt)
          Length = 181

 Score =  142 bits (344), Expect = 6e-33
 Identities = 66/128 (51%), Positives = 90/128 (70%), Gaps = 8/128 (6%)
 Frame = +3

Query: 240 IFKMPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAF 419
           + KMPRVV DQ+A ++S++LF+RLSR++E++YTGYRDR  EERQ+RF + CR G  EIAF
Sbjct: 2   LLKMPRVVSDQRATYDSNELFRRLSRDTEIKYTGYRDRGTEERQLRFQNSCRAGRAEIAF 61

Query: 420 TGTGTNLQLVF-DHSPYNNRG-------CDFQKENGKAHIVSRFIMNGVCVRWRGWIDLE 575
            G+GTN  L F   S    +G        +F +E GK H+ + FI+NGVCV W+GW+DL 
Sbjct: 62  VGSGTNFTLQFYPWSVEGGQGITPPKDYVNFDREPGKVHLKAPFILNGVCVCWKGWMDLH 121

Query: 576 RLDGAGCL 599
           RL+G G +
Sbjct: 122 RLEGMGSI 129


>UniRef50_UPI0000E24525 Cluster: PREDICTED: hypothetical protein
           LOC468115, partial; n=1; Pan troglodytes|Rep: PREDICTED:
           hypothetical protein LOC468115, partial - Pan
           troglodytes
          Length = 197

 Score = 90.2 bits (214), Expect = 3e-17
 Identities = 36/56 (64%), Positives = 49/56 (87%)
 Frame = +3

Query: 246 KMPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEI 413
           KMPRVVPDQ++KFE+++ F++LSRE E++YTG+RDRP EERQ RF + CR+G +EI
Sbjct: 71  KMPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEI 126



 Score = 50.4 bits (115), Expect = 3e-05
 Identities = 21/33 (63%), Positives = 28/33 (84%)
 Frame = +3

Query: 249 MPRVVPDQKAKFESDDLFKRLSRESEVRYTGYR 347
           MPRVVPDQ++KFE+++ F++LSRE EVR  G R
Sbjct: 1   MPRVVPDQRSKFENEEFFRKLSRECEVRQAGGR 33


>UniRef50_UPI000155C339 Cluster: PREDICTED: similar to core-binding
           factor, beta subunit, partial; n=1; Ornithorhynchus
           anatinus|Rep: PREDICTED: similar to core-binding factor,
           beta subunit, partial - Ornithorhynchus anatinus
          Length = 117

 Score = 66.1 bits (154), Expect = 6e-10
 Identities = 27/42 (64%), Positives = 33/42 (78%)
 Frame = +3

Query: 327 VRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGTGTNLQLVF 452
           ++YTG+RDRP EERQ RF + CR+G +EIAF  TGTNL L F
Sbjct: 1   IKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQF 42


>UniRef50_Q4RCC9 Cluster: Chromosome undetermined SCAF19216, whole
           genome shotgun sequence; n=6; Euteleostomi|Rep:
           Chromosome undetermined SCAF19216, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 76

 Score = 48.8 bits (111), Expect = 1e-04
 Identities = 19/33 (57%), Positives = 25/33 (75%)
 Frame = +3

Query: 504 KAHIVSRFIMNGVCVRWRGWIDLERLDGAGCLE 602
           + ++ +  I+NGVCV W+GWIDL RLDG G LE
Sbjct: 1   QVYLKAPMILNGVCVIWKGWIDLHRLDGMGYLE 33


>UniRef50_A4KUC1 Cluster: Tlm Orf16; n=9; Bacteria|Rep: Tlm Orf16 -
           Streptoalloteichus hindustanus
          Length = 189

 Score = 37.9 bits (84), Expect = 0.18
 Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 2/115 (1%)
 Frame = +3

Query: 264 PDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGT--GTN 437
           P++     +  L +RLS   +      R   PE       +   EG+  + FT T  GT 
Sbjct: 75  PEEVPADPTPSLVERLSAAEQPIEASLR---PERTASALRAAIDEGYVIVRFTETRGGTE 131

Query: 438 LQLVFDHSPYNNRGCDFQKENGKAHIVSRFIMNGVCVRWRGWIDLERLDGAGCLE 602
           L +  D    +  G DF   +G+  +V    ++   VR    IDL  L G G LE
Sbjct: 132 LGIQLDQGATDLAGADFAAGSGEVTLVGTLTLDFEPVRCVARIDLATLAGQGRLE 186


>UniRef50_Q4P6A9 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 1207

 Score = 37.5 bits (83), Expect = 0.24
 Identities = 20/80 (25%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
 Frame = -3

Query: 563 PTSPSYTNTVHDESGYDVSFSIFLLKVAATVVVG*V-IEDKLKVCAGTGKRYLRVSLAAT 387
           P+   +T+ ++      V+  IF + +A  +VV  +  +DK +  A   +  +R S++A+
Sbjct: 346 PSKVPFTSPLYGVIAISVAVGIFFMTIAHGLVVRSIKAKDKKRAAAIAAQEKVRGSISAS 405

Query: 386 AHESHLAFFGRPVSVSSVSN 327
           + E+H+  FG P  ++S+++
Sbjct: 406 SSETHIDGFGLPPKMASLAS 425


>UniRef50_Q034X9 Cluster: Predicted transcriptional regulator; n=1;
           Lactobacillus casei ATCC 334|Rep: Predicted
           transcriptional regulator - Lactobacillus casei (strain
           ATCC 334)
          Length = 343

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 267 DQKAKFESDD-LFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGTGTNLQ 443
           D++A  + D+  F R   +     T +R +P  +   RF  G  + HT   + G   NL+
Sbjct: 190 DEQADDDPDEGKFVRFRLDYMRNITYHRQQPTHDHDERFRGGRLQNHTWYPYLGKPINLE 249

Query: 444 LVFDHSP 464
           +++ + P
Sbjct: 250 ILYSYDP 256


>UniRef50_A6S9B3 Cluster: Putative uncharacterized protein; n=1;
           Botryotinia fuckeliana B05.10|Rep: Putative
           uncharacterized protein - Botryotinia fuckeliana B05.10
          Length = 835

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 25/103 (24%), Positives = 46/103 (44%)
 Frame = +3

Query: 174 DPSPLAGMLPFDSIYEQPKPRFIFKMPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDR 353
           D  P + ++    I ++  P    +  + +PD  A  + +DLF     +++  + G++D 
Sbjct: 538 DSPPPSYLIKSPGIIDRTLPYPNRREDKSLPDVAA-VQPEDLF-----DADDIFFGFQDM 591

Query: 354 PPEERQMRFMSGCREGHTEIAFTGTGTNLQLVFDHSPYNNRGC 482
            P ER+++      +  T     G+G    L FDH PY    C
Sbjct: 592 TPHEREVQDRLDAEKEATRANSYGSGFRAPLHFDHCPYTAPIC 634


>UniRef50_A6NUK3 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides capillosus ATCC 29799|Rep: Putative
           uncharacterized protein - Bacteroides capillosus ATCC
           29799
          Length = 243

 Score = 32.3 bits (70), Expect = 9.2
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 387 GC-REGHTEIAF-TGTGTNLQLVFDHSPYNNRGCDFQKENGKAH 512
           GC  + HT+ AF T     L+   D  PYN+  CD  +EN KAH
Sbjct: 136 GCVADIHTQAAFKTYWAKRLEEDPDIDPYNDLFCDLLEENAKAH 179


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 611,834,708
Number of Sequences: 1657284
Number of extensions: 12427052
Number of successful extensions: 34664
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 33596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34655
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43147568152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)