Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0652
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    27   1.6  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    27   1.6  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    26   4.9  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    26   4.9  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   8.6  

>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +2

Query: 335 HWIPRPASRRTPDAIHERLPRGTHGDSVYRYRHKPSACLRSLTLQQPWLRLSKGK 499
           H IP P  R++  A  ++    +  +  Y  RH+ S    S T  +  LR SKGK
Sbjct: 123 HEIPIPKKRKSKPAPKQKKSVASDDEDAYDKRHRFSINSASGTEIRTSLRSSKGK 177


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 285 ESDDLFKRLSRESEVRYTGYRDRPPEE 365
           + DD+FKRL ++ + R   YR R   E
Sbjct: 390 QEDDIFKRLKQQEDRRNENYRRRQQRE 416


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 278 GFLIGHYTWHFENEPWLWL 222
           GF  G Y WHF +  WL+L
Sbjct: 246 GFECGIYYWHFCDVVWLFL 264


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
 Frame = +2

Query: 350 PASRRTPDAIHERLPRGTHGDSVYRYRHKPSACLRSLTLQQPWLRLSK---GKWKSSHRI 520
           P S  TP    E+      G S++        C++   LQQ WL L++     W S   +
Sbjct: 111 PLSINTPAQWPEKEVYSLQGTSIFN-----PVCVKRKILQQEWLSLNQRYSDSWPSKITL 165

Query: 521 P--IH-----HERCL 544
           P  +H     H RCL
Sbjct: 166 PKWVHADALFHSRCL 180


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 402 HTEIAFTGTGTNLQLVFDHSPY 467
           +T + FTGTGT        SPY
Sbjct: 489 NTTVTFTGTGTGSATATSSSPY 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,418
Number of Sequences: 5004
Number of extensions: 49532
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)