Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0652
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0339 - 7623897-7625837                                           29   2.9  
05_01_0471 - 3751497-3751522,3751760-3751800,3752466-3752507,375...    29   3.8  
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143...    29   3.8  
01_01_0591 - 4401847-4402063,4402860-4403002,4403339-4403447,440...    28   5.0  
06_02_0014 + 10585888-10586422,10586621-10586652,10587127-10587216     27   8.7  
03_05_0721 + 27134277-27134666,27135401-27135466,27137036-271371...    27   8.7  

>03_02_0339 - 7623897-7625837
          Length = 646

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 245 ENEPWLWLLVDRVKRQHAGQRRRITHSVHNLRLL 144
           +NEP L+L+ D + R H G       + HNL  L
Sbjct: 145 QNEPILFLIWDHIARLHTGNLAARADAAHNLASL 178


>05_01_0471 -
           3751497-3751522,3751760-3751800,3752466-3752507,
           3753249-3753310,3753398-3753584,3753692-3753826,
           3753872-3753948,3754005-3754076,3754389-3754588,
           3754675-3755020,3755463-3755519,3755655-3757433,
           3757539-3757720,3757943-3758072
          Length = 1111

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/65 (24%), Positives = 27/65 (41%)
 Frame = +3

Query: 210 SIYEQPKPRFIFKMPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSG 389
           SI ++ K  F+ +   V+ DQ   + + D +     ++ V  +      PEE Q      
Sbjct: 334 SILQKLKELFVLRQQAVLSDQNLAYSNSDEYAPEETQANVSLSCPEQCAPEEPQANTTPS 393

Query: 390 CREGH 404
           C E H
Sbjct: 394 CPELH 398


>02_04_0056 +
           19313422-19313967,19314035-19314168,19314263-19314398,
           19314870-19314923,19314995-19315135,19315220-19315546,
           19315647-19315916,19316080-19316226,19316890-19317045,
           19317223-19317290,19318210-19318309,19318696-19318985,
           19319074-19319274,19319840-19319902,19320263-19320356,
           19320964-19321035,19321979-19322077,19322254-19322376
          Length = 1006

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/85 (23%), Positives = 34/85 (40%)
 Frame = +3

Query: 156 VMHAMSDPSPLAGMLPFDSIYEQPKPRFIFKMPRVVPDQKAKFESDDLFKRLSRESEVRY 335
           + H     +P A     +     P P  +FK+  + P +KA F  +DL+ R  R  E + 
Sbjct: 234 MFHGQKQSTPKAARAATEDSTFHPLPA-LFKLTGLSPFKKAAFTPEDLYSR-KRPLETKS 291

Query: 336 TGYRDRPPEERQMRFMSGCREGHTE 410
           +    +   E+      G  + H E
Sbjct: 292 SAPATKLTTEKLRLSSDGNEDDHAE 316


>01_01_0591 -
           4401847-4402063,4402860-4403002,4403339-4403447,
           4403546-4404707,4405754-4405865,4405980-4406015
          Length = 592

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 407 GDSVYRYRHKPSACLRSLTLQQPWLRLSKGKWKSSHRIP 523
           G + YR R + S  LR+  +    L+L  G W ++ ++P
Sbjct: 55  GGAPYRLRRRNSETLRAQYINTKELKLCVGTWNAAGKVP 93


>06_02_0014 + 10585888-10586422,10586621-10586652,10587127-10587216
          Length = 218

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 251 HFENEPWLWLLVDRVKRQHAGQRRRITHSVHNLRLL 144
           H  ++PWLWL   R +    G+RR I   + N R +
Sbjct: 97  HLRDQPWLWL---RGEDTFGGERRSIQAKLANPRAI 129


>03_05_0721 +
           27134277-27134666,27135401-27135466,27137036-27137191,
           27137286-27137453,27137544-27137711
          Length = 315

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 278 GFLI-GHYTWHFENEPWLWLLVDRVKRQHAGQRR 180
           GF+I G  +    ++PW+  LVD ++RQ+A  +R
Sbjct: 88  GFVISGSCSDAHADDPWIVALVDLIRRQNAAGKR 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,216,551
Number of Sequences: 37544
Number of extensions: 367457
Number of successful extensions: 1093
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)