Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0652
         (607 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35520| Best HMM Match : CBF_beta (HMM E-Value=0)                   143   9e-35
SB_40713| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   5e-07
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.3  
SB_26854| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 29   2.2  
SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)                    29   3.9  
SB_54230| Best HMM Match : EGF (HMM E-Value=0)                         28   5.1  
SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07)                  28   5.1  
SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  

>SB_35520| Best HMM Match : CBF_beta (HMM E-Value=0)
          Length = 174

 Score =  143 bits (347), Expect = 9e-35
 Identities = 64/121 (52%), Positives = 89/121 (73%), Gaps = 3/121 (2%)
 Frame = +3

Query: 249 MPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGT 428
           MPRVVP+QK KFE+D++F++L+RESE++YTGYRDR  EER +RF +  R+G + +A+  +
Sbjct: 1   MPRVVPEQKQKFENDEMFRKLARESEIKYTGYRDRSHEERVVRFQTEIRDGQSNVAYVAS 60

Query: 429 GTNLQLVFDHSP---YNNRGCDFQKENGKAHIVSRFIMNGVCVRWRGWIDLERLDGAGCL 599
           GTNL L F  +      +   DF +E GK HI S FI+NGVC+ ++GWIDL+RLDG G +
Sbjct: 61  GTNLTLHFPKAEDGFIRSEFLDFDREPGKVHIKSHFILNGVCIIFKGWIDLQRLDGIGYI 120

Query: 600 E 602
           E
Sbjct: 121 E 121


>SB_40713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 39

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 20/31 (64%), Positives = 26/31 (83%)
 Frame = +3

Query: 510 HIVSRFIMNGVCVRWRGWIDLERLDGAGCLE 602
           HI S FI+NGVC+ ++GWIDL+RLDG G +E
Sbjct: 2   HIKSHFILNGVCIIFKGWIDLQRLDGIGYIE 32


>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 335 HWIPRPASRRTPDAIHERLPRGTHGDSVYRYRHKPSACLRSLT 463
           H +       TP +  ++  RG  GDSV   RH P   LR+L+
Sbjct: 847 HAVDEDGKPSTPPSRSKKRTRGISGDSVSDNRHTPRRSLRNLS 889


>SB_26854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 456 HSPYNNRGCDFQKENGKAHIVS--RFIMNGVCVRWRGWIDLE 575
           H PY +R      E G  H+V+  +F ++G  + W   ID++
Sbjct: 39  HLPYKSRWLYVGTEKGNVHVVNIEKFELSGYTINWNKAIDIK 80


>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 897

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = +3

Query: 228 KPRF----IFKMPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCR 395
           +PRF       +PR+    +  FE   +FK  S +  + Y G +D+    R+     G R
Sbjct: 315 QPRFKGTSYMSLPRLPRSARTSFELSIMFKASSGDGLLLYGGRKDK----RKDFLALGLR 370

Query: 396 EGHTEIAFT 422
            GH E  F+
Sbjct: 371 NGHVEFRFS 379


>SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)
          Length = 1075

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 273 KAKFESDDLFKRLSRESEVRYTGYRDRPPEERQM-RFMSGCREGHTEIAFTGT 428
           KAK E  D+F +++ E E++  G+R+ P ++  + +   GC+    ++  T +
Sbjct: 431 KAK-EGKDMFTKIAEEYEIQVLGWREIPYDDTSLGKTSKGCQPYMEQVFVTSS 482


>SB_54230| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1359

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 211 ESKGNMPANGEGSLIACITYGSYSFACTEPNIT*RACLTD 92
           E K + P   +G+ +   TYGSYS AC    +T + C TD
Sbjct: 762 ECKPSNPCRNDGTCVN--TYGSYSCAC-PTGLTGKNCETD 798


>SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07)
          Length = 827

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/73 (26%), Positives = 28/73 (38%)
 Frame = +3

Query: 126 SVQAKL*EP*VMHAMSDPSPLAGMLPFDSIYEQPKPRFIFKMPRVVPDQKAKFESDDLFK 305
           S +  L +P      S+    A   PF    E P+P    K+   +   K  F+ DDL  
Sbjct: 338 SDEKNLSKPESEQCSSEEESTAPKEPFYQTLEPPEPESPEKVSDPIQSSKQSFQKDDLLL 397

Query: 306 RLSRESEVRYTGY 344
               + E+   GY
Sbjct: 398 EDKPKEELNPEGY 410


>SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = +3

Query: 210 SIYEQPKPRFIFKMPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSG 389
           SI + P P   F +    P Q+A+ E        S++SE   TGY       R +RF   
Sbjct: 511 SIDDSPVPFDTFALDDEEP-QEAQQEKASEAAETSKQSEALSTGYSSAKTSSRPLRFYGN 569

Query: 390 CR 395
            R
Sbjct: 570 TR 571


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,310,355
Number of Sequences: 59808
Number of extensions: 415510
Number of successful extensions: 2589
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2586
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)