Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0652
         (607 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43660.1 68418.m05336 expressed protein similar to unknown pr...    29   1.8  
At3g60910.1 68416.m06814 expressed protein low similarity to PIR...    28   4.2  
At5g50100.1 68418.m06204 expressed protein contains Pfam domain ...    28   5.5  
At2g39320.1 68415.m04827 OTU-like cysteine protease family prote...    28   5.5  
At4g32480.1 68417.m04624 expressed protein contains Pfam profile...    27   9.6  

>At5g43660.1 68418.m05336 expressed protein similar to unknown
           protein (gb|AAB72163.1)
          Length = 361

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 267 DQKAKFESDDLFKRLSRE---SEVRYTGYRDRPPEERQMRF 380
           ++KAKF SD L K +SRE     +R+  YR+      Q RF
Sbjct: 48  EEKAKFMSDILHKYISREECAKAIRFKNYREWIMSNYQPRF 88


>At3g60910.1 68416.m06814 expressed protein low similarity to
           PIR|I46078 endothelin converting enzyme from Bos
           primigenius taurus
          Length = 252

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 177 PSPLAGMLPFDSIYEQPKPRFIFKMPRVVPDQKAKFESDDLFK 305
           P    GMLP D + E P   FI+   +   D++A+  S  L +
Sbjct: 207 PITSEGMLPHDYVLEDPDSHFIYICKKKDEDEEAQLPSYPLME 249


>At5g50100.1 68418.m06204 expressed protein contains Pfam domain
           PF04134: Protein of unknown function, DUF393
          Length = 214

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 348 DRPPEERQMRFMSGCREGHTEIAFTGTGTNLQLVFDHSPYNNRGCDFQKENGKAHIV 518
           D P   R++  +    E H  I F    +N     D+SP +N+G D++   G+ H +
Sbjct: 82  DCPLCMREVNMLMERNEKHGTIKFVDISSN-----DYSPEDNQGLDYKTVMGQIHAI 133


>At2g39320.1 68415.m04827 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 189

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 350 PASRRTPD-AIHERLPRGTHGDSVYRYRHKPSACLRSLTLQQPWLRLSKGK 499
           P S++ PD  IH     G H +S+Y+   +  +   S +    W++L + K
Sbjct: 77  PKSQKEPDKVIHMSYLAGIHFNSIYKKNKEKGSRSSSSSSSAVWMKLQRKK 127


>At4g32480.1 68417.m04624 expressed protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 287

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +2

Query: 485 LSKGKWKSSHRIPI-HHE 535
           +SK KW+SSH IP   HE
Sbjct: 133 ISKSKWRSSHEIPAGEHE 150


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,221,981
Number of Sequences: 28952
Number of extensions: 275020
Number of successful extensions: 757
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)