Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0651
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||... 104 8e-24
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 31 0.17
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 27 2.7
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 26 4.8
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma... 26 4.8
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 25 6.3
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 25 6.3
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 6.3
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 25 8.3
>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 237
Score = 104 bits (250), Expect = 8e-24
Identities = 60/129 (46%), Positives = 80/129 (62%), Gaps = 3/129 (2%)
Frame = +2
Query: 185 LVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKASDPLILEKCKDIKWHFIGHLQTNK 364
LVAVSK PVE ++EAYNAGQRHFGENY+ E K L+ + D++WHFIG LQ++K
Sbjct: 26 LVAVSKFHPVETLMEAYNAGQRHFGENYMQEFLKKVE--LMPD---DVQWHFIGSLQSSK 80
Query: 365 INKLLGSPGLFMVETVDSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEP-- 538
K+ L+ +ET+D+EK A +N + L V +QVNTSGE+ K G+ P
Sbjct: 81 CKKIASVKNLYSIETIDTEKKARLVNSAREALQLP---LNVYIQVNTSGEENKGGVTPSK 137
Query: 539 -LETTKAVE 562
LE K V+
Sbjct: 138 VLELCKQVQ 146
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 30.7 bits (66), Expect = 0.17
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 143 VARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKAS 295
+++ D+P+ AP VAV++ +P EL N QR E Y E K++
Sbjct: 374 ISKTFDDVPKRAP--VAVTEFRPSELFELNENKSQRSLAEEYEEEFLKKSN 422
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 194 QQPILVLSEVGLYFFW 147
++P L+ + VGLYFFW
Sbjct: 1090 EKPYLIHNVVGLYFFW 1105
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 422 KLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLETTKAVEHIL 571
+ A + + K K+ L + ++ GE+ + + TK VEHIL
Sbjct: 337 RAAKRVTSKLEKVSKQNPTLVYPIAIHLLGERGSLNFDRVTNTKLVEHIL 386
>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 256 EVPLASIVSFHNKFDRFNF*YS 191
+ P+ ++SF N F+RF F Y+
Sbjct: 205 QTPIKDLLSFSNVFNRFRFLYA 226
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.4 bits (53), Expect = 6.3
Identities = 34/131 (25%), Positives = 58/131 (44%)
Frame = +2
Query: 203 IKPVELIVEAYNAGQRHFGENYVNELSDKASDPLILEKCKDIKWHFIGHLQTNKINKLLG 382
+KP+E I EA G+ E +E +D ++ ++ + + + +L G
Sbjct: 1362 LKPLEDIDEAPIEGRAQ--EALEDEDNDATNEKMVSRSKQHASYEGPDEADKVALRQLKG 1419
Query: 383 SPGLFMVETVDSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLETTKAVE 562
S VE V+ ++ D K KER +++ + NT + L+ L+T K
Sbjct: 1420 SN---KVEDVNMDEEEDEGFKSDESVSDFKER-KLLEKQNTVSISERRELQ-LKTAK--- 1471
Query: 563 HILENCPNLDF 595
IL NC +LDF
Sbjct: 1472 EILSNCKHLDF 1482
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 248 RHFGENYVNELSDKASDPLILEKCKDIKWHFIGHLQTNKINKLLGSP 388
RH + +N L+ + P KC + +GH++TNKI L G P
Sbjct: 926 RHAAKEGIN-LNGEGRKPTT-RKCSNCGQ--VGHMKTNKICPLFGRP 968
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 320 KDIKWHFIGHLQTNKINKLLG 382
+++KW + LQ+ K+N LLG
Sbjct: 950 EEVKWKYWNRLQSVKLNGLLG 970
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -2
Query: 306 INGSLALSLNSFT*FSPKCLWPAL*ASTISSTGLIFDTATNLGAI*GRSLL 154
+N L+ S S P + P+ S +S+ L+ +TNLG++ SLL
Sbjct: 29 VNSKLSQSTTSVN-AGPSLISPSFLDSYANSSSLLHKPSTNLGSLKTSSLL 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,346,636
Number of Sequences: 5004
Number of extensions: 46636
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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