Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0651
(595 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26507| Best HMM Match : Ala_racemase_N (HMM E-Value=0.39) 76 1e-24
SB_49250| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_5082| Best HMM Match : Fn_bind (HMM E-Value=6.8) 30 1.6
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31) 29 2.8
SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_18608| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_20297| Best HMM Match : LCCL (HMM E-Value=9.7) 28 6.5
SB_17067| Best HMM Match : TP2 (HMM E-Value=4.1) 28 6.5
SB_17066| Best HMM Match : PHD (HMM E-Value=1.6) 28 6.5
SB_54549| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0) 27 8.6
SB_45719| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_26507| Best HMM Match : Ala_racemase_N (HMM E-Value=0.39)
Length = 195
Score = 76.2 bits (179), Expect(2) = 1e-24
Identities = 35/60 (58%), Positives = 45/60 (75%)
Frame = +2
Query: 95 DIMYGLKTVLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVN 274
+I LKTVL +I +R ++L ++ PRLVAVSK KP+E I+EAYN GQRHFGENYV+
Sbjct: 9 NIGLALKTVLQKINEVAEKRPENLQKLVPRLVAVSKTKPIECIIEAYNNGQRHFGENYVS 68
Score = 54.4 bits (125), Expect(2) = 1e-24
Identities = 27/44 (61%), Positives = 33/44 (75%)
Frame = +2
Query: 386 PGLFMVETVDSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQ 517
P L+MVETVDSEKLA LN W K+ +E L+VMV+VNTS E+
Sbjct: 70 PNLYMVETVDSEKLAATLNNSWGKF-PNREPLKVMVEVNTSEEK 112
>SB_49250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 638
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 404 ETVDSEKLADNLNKQWLKYRKEKERL-RVMVQVNTSGEQAKSGLEPLETTK 553
ET +K + LNK+ + K+KERL +V ++N E+ +E L+ T+
Sbjct: 543 ETERLDKTRERLNKERKRLNKKKERLNKVRKRLNKEKERLNKEMERLDKTR 593
>SB_5082| Best HMM Match : Fn_bind (HMM E-Value=6.8)
Length = 367
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Frame = +2
Query: 263 NYVNELSDKASDPLILEKCKDI-KWHFI---GHLQTNKINKLLGSPGLFMVETVDSEKLA 430
N+ ++LS+K+S+ + + K +I G++ NK+ +L G ++ + + ++
Sbjct: 2 NHTSQLSEKSSNRDRNDHATSVGKLGYITENGYVDLNKVQLVLSELG-YVEDEIFKKRQQ 60
Query: 431 DNLN-KQWLKYRKEKERLRVM 490
DN+ K+ LK KE+ER++ M
Sbjct: 61 DNIAYKKRLKANKERERIQKM 81
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +2
Query: 101 MYGLKTVLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAG 244
M +K + IAVA LP +A RLV +KIK +++ A+ AG
Sbjct: 51 MVEVKDKMETTRIAVATGKVLLPTVAFRLVKENKIKKGDVLTTAHLAG 98
>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
Length = 883
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/60 (23%), Positives = 33/60 (55%)
Frame = +2
Query: 119 VLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKASD 298
+++ +++ S PQ+ P++ V+ P+E+I E + A ++F N + S+K+ +
Sbjct: 319 IVNSQAVSIGNSSSPAPQVQPQVKIVNTPIPIEVIKE-HAAKLKNFFNNLIRLASEKSPE 377
>SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1194
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +2
Query: 356 TNKINKLLGSPGLFMVETVDSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGL 532
+ K K+ GS GL MV S ++A N W+KY + + G +K L
Sbjct: 73 SGKDKKVYGSYGLAMVLRCPSHQVALGANYTWIKYNHVSNTWEPLAESKYYGVTSKGDL 131
>SB_18608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 416 SEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLETTK 553
++KLA L K+ +EKE ++ + V T+ +Q +E L+ TK
Sbjct: 65 AQKLARELMLYKQKHEREKELVKSLKLVETTRDQTLEEIEQLQRTK 110
>SB_20297| Best HMM Match : LCCL (HMM E-Value=9.7)
Length = 100
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/60 (23%), Positives = 33/60 (55%)
Frame = +2
Query: 413 DSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLETTKAVEHILENCPNLD 592
D E+L+ + ++ +R +ER+ ++++SG +++G+ K +E+ PNL+
Sbjct: 9 DRERLSSD-SQPSSDFRNRRERVDSSSEISSSGYYSENGISGKRKQKKKVTFVESAPNLE 67
>SB_17067| Best HMM Match : TP2 (HMM E-Value=4.1)
Length = 330
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/60 (23%), Positives = 33/60 (55%)
Frame = +2
Query: 413 DSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLETTKAVEHILENCPNLD 592
D E+L+ + ++ +R +ER+ ++++SG +++G+ K +E+ PNL+
Sbjct: 239 DRERLSSD-SQPSSDFRNRRERVDSSSEISSSGYYSENGISGKRKQKKKVTFVESAPNLE 297
>SB_17066| Best HMM Match : PHD (HMM E-Value=1.6)
Length = 523
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/60 (23%), Positives = 33/60 (55%)
Frame = +2
Query: 413 DSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLETTKAVEHILENCPNLD 592
D E+L+ + ++ +R +ER+ ++++SG +++G+ K +E+ PNL+
Sbjct: 165 DRERLSSD-SQPSSDFRNRRERVDSSSEISSSGYYSENGISGKRKQKKKVTFVESAPNLE 223
>SB_54549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -2
Query: 549 VVSNGSKPLFACSPLVLTCTITLNLSFS 466
VVS+ S+P+F V++C + L+LS+S
Sbjct: 368 VVSSQSRPIFTRDLRVVSCQVCLHLSWS 395
>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 3312
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 585 FGQFSRMCSTAFVVSNGSKPLFACSP-LVLTCTITLNLSFSF 463
FG +S CS F +++ K AC LV++ T+ L F++
Sbjct: 598 FGSYSCSCSPGFALADDKKSCKACKDNLVMSKINTMPLCFAY 639
>SB_45719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +2
Query: 59 LQLMTSEVDAKVDIMYGLKTVLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVELIVEAYN 238
L+ T+E+D D LKT+L Q ++ + ++ + + V V+K +E + N
Sbjct: 186 LEAATTEMDKIADEYTKLKTILQQSDLILEEMRRERDALRAQAVLVAKDIEIEQYKDMVN 245
Query: 239 AGQR 250
Q+
Sbjct: 246 GLQQ 249
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,601,245
Number of Sequences: 59808
Number of extensions: 308904
Number of successful extensions: 853
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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