Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0650
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0195 + 1327071-1327187,1328060-1328203,1328340-1328431,132...    59   2e-09
05_04_0254 - 19444409-19444621,19444724-19444887,19444974-194450...    36   0.021
03_05_1105 + 30438140-30438350,30438448-30438926                       33   0.11 

>02_01_0195 +
           1327071-1327187,1328060-1328203,1328340-1328431,
           1329393-1329579,1329676-1329831,1329959-1330012
          Length = 249

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 24/70 (34%), Positives = 44/70 (62%)
 Frame = -3

Query: 468 LMTLVNLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHALELFIDFI 289
           L    ++F  S   +   +Y GL++  G++++DTQ IIE+   G  D+++HAL LF DF+
Sbjct: 163 LQFAASIFGHSTGSFMFEVYFGLLIFLGYMVYDTQEIIERAHHGDMDYIKHALTLFTDFV 222

Query: 288 GMFRRLVIIL 259
            +  R+++I+
Sbjct: 223 AVLVRILVIM 232


>05_04_0254 -
           19444409-19444621,19444724-19444887,19444974-19445087,
           19446086-19446395
          Length = 266

 Score = 35.9 bits (79), Expect = 0.021
 Identities = 14/57 (24%), Positives = 35/57 (61%)
 Frame = -3

Query: 408 LGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHALELFIDFIGMFRRLVIILTQKEEQN 238
           LG ++  GF+++DT+ +I  +R    D++  ++EL++D + +F  ++ ++   +  N
Sbjct: 212 LGALVFSGFIIYDTENLI--KRHTYDDYIWASVELYLDILNLFLYILNMIRSMQSDN 266


>03_05_1105 + 30438140-30438350,30438448-30438926
          Length = 229

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 14/49 (28%), Positives = 30/49 (61%)
 Frame = -3

Query: 408 LGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHALELFIDFIGMFRRLVII 262
           L  ++ CG++++DT  +I  +R    ++V  A+ L++D I +F  L+ +
Sbjct: 177 LAALVFCGYIVYDTDNLI--KRYSYDEYVWAAVALYLDVINLFLSLLTL 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,812,167
Number of Sequences: 37544
Number of extensions: 218823
Number of successful extensions: 426
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)