Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0650
         (539 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17894| Best HMM Match : UPF0005 (HMM E-Value=0.00021)               32   0.26 
SB_33588| Best HMM Match : VRP3 (HMM E-Value=6.4)                      28   5.6  
SB_25768| Best HMM Match : tRNA_int_endo_N (HMM E-Value=9.2)           28   5.6  
SB_27574| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20)                     27   9.8  

>SB_17894| Best HMM Match : UPF0005 (HMM E-Value=0.00021)
          Length = 344

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
 Frame = -3

Query: 411 YLGLMLMCGFVLFDTQLIIEKRR----MGSK--DFVQHALELFIDFIGMFRRLVIILTQK 250
           Y GL++  GF+L+DTQ II +        S+  D +  ++ +++D I +F R+V I+  +
Sbjct: 280 YGGLVIFGGFLLYDTQKIIRQAETHPLYASRPYDPINASIGIYMDTINIFIRIVTIMASQ 339

Query: 249 EEQ 241
             +
Sbjct: 340 NNR 342


>SB_33588| Best HMM Match : VRP3 (HMM E-Value=6.4)
          Length = 372

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
 Frame = -3

Query: 300 IDFIGMFRRLVIILTQKE-------EQNXXXXXXXKYT*KVLFTHISMVIRMFEDICFFF 142
           + F  M R   IIL +K        EQN       K+T  V+ TH+S+    F  ICF  
Sbjct: 6   VSFTVMLRCTTIILNKKTQHQQFDYEQNERGLRNVKFTLVVISTHVSINFNAFNIICFAI 65

Query: 141 YFL 133
           + L
Sbjct: 66  HDL 68


>SB_25768| Best HMM Match : tRNA_int_endo_N (HMM E-Value=9.2)
          Length = 247

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = -3

Query: 462 TLVNLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGS 334
           T+  L + +H +Y     +  + +   +++DT++II + R+GS
Sbjct: 34  TMTQLRIGAHVVYDTEATITRIRLGAHIVYDTEVIITRIRLGS 76


>SB_27574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 82  IVKCNLQFFCIGLKYFNQKIKKKTNIFK-HPYHHTDV 189
           +VK  L F C   KY  ++ K K+N FK    HHT +
Sbjct: 240 LVKEKLCFNCTKGKYRAEECKSKSNCFKCKQRHHTSI 276


>SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20)
          Length = 2232

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 505  RWHIDDTVHVYVTNDFG 455
            R HI D +H+Y+T+D G
Sbjct: 2195 RLHIIDEIHIYITDDTG 2211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,306,304
Number of Sequences: 59808
Number of extensions: 279696
Number of successful extensions: 602
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)