Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0650
         (539 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47120.1 68418.m05809 Bax inhibitor-1 putative / BI-1 putativ...    65   2e-11
At4g17580.1 68417.m02628 Bax inhibitor-1 family protein / BI-1 f...    56   2e-08
At5g47130.1 68418.m05810 Bax inhibitor-1 family / BI-1 family si...    49   2e-06
At1g03070.1 68414.m00281 expressed protein low similarity to N-m...    36   0.023
At4g14730.1 68417.m02265 transmembrane protein-related low simil...    35   0.030
At3g63310.1 68416.m07121 expressed protein low similarity to N-m...    34   0.053
At4g02690.1 68417.m00364 hypothetical protein low similarity to ...    33   0.12 
At4g15470.1 68417.m02364 expressed protein low similarity to N-m...    32   0.21 
At3g49740.1 68416.m05438 pentatricopeptide (PPR) repeat-containi...    29   2.6  
At3g44020.1 68416.m04713 thylakoid lumenal P17.1 protein contain...    27   8.0  

>At5g47120.1 68418.m05809 Bax inhibitor-1 putative / BI-1 putative
           SP:Q9LD45: Bax inhibitor-1 (BI-1) (AtBI-1). [Mouse-ear
           cress]             {Arabidopsis thaliana}
          Length = 247

 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 29/72 (40%), Positives = 48/72 (66%)
 Frame = -3

Query: 474 MSLMTLVNLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHALELFID 295
           M L    ++F  S  +++  LY GL++  G+++ DTQ IIEK  +G  D+V+H+L LF D
Sbjct: 160 MWLQFASSIFGGSASIFKFELYFGLLIFVGYMVVDTQEIIEKAHLGDMDYVKHSLTLFTD 219

Query: 294 FIGMFRRLVIIL 259
           F+ +F R++II+
Sbjct: 220 FVAVFVRILIIM 231


>At4g17580.1 68417.m02628 Bax inhibitor-1 family protein / BI-1
           family protein similar to SP|Q9LD45 Bax inhibitor-1
           (BI-1) (AtBI-1) {Arabidopsis thaliana}; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 247

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 22/64 (34%), Positives = 40/64 (62%)
 Frame = -3

Query: 453 NLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHALELFIDFIGMFRR 274
           ++F  S  + +  LY GL++  G+++ DTQ+I EK   G  D+VQH+   F DF  +F +
Sbjct: 169 SIFGGSTTVVKFELYFGLLIFVGYIVVDTQMITEKAHHGDMDYVQHSFTFFTDFASLFVQ 228

Query: 273 LVII 262
           ++++
Sbjct: 229 ILVL 232


>At5g47130.1 68418.m05810 Bax inhibitor-1 family / BI-1 family
           similar to SP|Q9LD45 Bax inhibitor-1 (BI-1) (AtBI-1)
           {Arabidopsis thaliana}
          Length = 187

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 21/55 (38%), Positives = 36/55 (65%)
 Frame = -3

Query: 423 QAHLYLGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHALELFIDFIGMFRRLVIIL 259
           +  +YLGL+L  G ++ +TQ IIEK   G  D+  H+L L+I F+ +F +++ I+
Sbjct: 118 EIQMYLGLLLFVGCIVVNTQEIIEKAHCGDMDYAVHSLILYIGFVRVFLQILSIM 172


>At1g03070.1 68414.m00281 expressed protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 247

 Score = 35.5 bits (78), Expect = 0.023
 Identities = 15/54 (27%), Positives = 31/54 (57%)
 Frame = -3

Query: 408 LGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHALELFIDFIGMFRRLVIILTQKE 247
           L  ++ CG++++DT  +I  +R    +++  A+ L++D I +F  L+ I    E
Sbjct: 196 LAAIIFCGYIVYDTDNLI--KRYSYDEYIWAAVSLYLDIINLFLALLTIFRAAE 247


>At4g14730.1 68417.m02265 transmembrane protein-related low
           similarity to transmembrane protein OTMP [Ovis aries]
           GI:9965379
          Length = 235

 Score = 35.1 bits (77), Expect = 0.030
 Identities = 13/48 (27%), Positives = 32/48 (66%)
 Frame = -3

Query: 399 MLMCGFVLFDTQLIIEKRRMGSKDFVQHALELFIDFIGMFRRLVIILT 256
           ++ CG+++FDT  +I+K  +   +++  A+ L++D + +F  L+ I++
Sbjct: 189 IVFCGYIIFDTNQLIKK--LNYDEYITAAIRLYLDVMNLFLSLLGIIS 234


>At3g63310.1 68416.m07121 expressed protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 239

 Score = 34.3 bits (75), Expect = 0.053
 Identities = 14/50 (28%), Positives = 31/50 (62%)
 Frame = -3

Query: 408 LGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHALELFIDFIGMFRRLVIIL 259
           L  ++ CG++++DT  +I  +R    +++  A+ L++D I +F  L+ +L
Sbjct: 187 LASIIFCGYIVYDTDNLI--KRHSYDEYIWAAVSLYLDVINLFLSLLTLL 234


>At4g02690.1 68417.m00364 hypothetical protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104, NMDA receptor
           glutamate-binding subunit [Rattus sp.] GI:8248741;
           contains Pfam profile PF01027: Uncharacterized protein
           family UPF0005
          Length = 248

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 13/47 (27%), Positives = 30/47 (63%)
 Frame = -3

Query: 399 MLMCGFVLFDTQLIIEKRRMGSKDFVQHALELFIDFIGMFRRLVIIL 259
           ++ CG++++DT  +I  +R    +++  A+ L++D I +F  L+ +L
Sbjct: 199 IIFCGYIVYDTDNLI--KRHTYDEYIWAAVSLYLDIINLFLYLLTVL 243


>At4g15470.1 68417.m02364 expressed protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 256

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 12/49 (24%), Positives = 31/49 (63%)
 Frame = -3

Query: 399 MLMCGFVLFDTQLIIEKRRMGSKDFVQHALELFIDFIGMFRRLVIILTQ 253
           ++ CG++++DT  +I  +R    +++  ++ L++D + +F  ++ IL Q
Sbjct: 207 LVFCGYIVYDTDNLI--KRFTYDEYILASVALYLDILNLFLTILRILRQ 253


>At3g49740.1 68416.m05438 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 737

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -1

Query: 416 IFILASCSCADLYYSTHNLSLRNAEWEAKTLCNMHWNYSLTLLECSEDW 270
           + ++ SCSCA + +  H L+++   +E  TL +   N ++T+    ED+
Sbjct: 295 VSVMGSCSCAAMGHQVHGLAIKTG-YEKYTLVS---NATMTMYSSFEDF 339


>At3g44020.1 68416.m04713 thylakoid lumenal P17.1 protein contains
           Pfam PF00684 : DnaJ central domain (4 repeats);
           SP:Q9LXV9; PMID:11719511; supported by EST AI997589.
          Length = 159

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 102 IFLHWPKIFQSENKKKNKYLQTSVSPY*CG*IIPFKYIFSHACDDG 239
           +F H P++    ++ +NK  +TSV  +    II    +F  +  DG
Sbjct: 28  LFFHKPELISHHHRNRNKLSRTSVHQHSANLIIHPSVLFLSSAFDG 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,939,967
Number of Sequences: 28952
Number of extensions: 192140
Number of successful extensions: 422
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)