Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0649
(540 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 268 6e-71
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 239 3e-62
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 235 6e-61
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 188 7e-47
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 180 2e-44
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 129 3e-29
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 79 5e-14
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 78 1e-13
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 78 1e-13
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 75 1e-12
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 72 1e-11
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 69 9e-11
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 68 2e-10
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 64 3e-09
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 62 6e-09
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 60 3e-08
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 60 4e-08
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 60 4e-08
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 58 1e-07
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 54 3e-06
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 53 5e-06
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 52 1e-05
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 46 4e-04
UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN full-le... 40 0.037
UniRef50_Q69NC6 Cluster: Putative uncharacterized protein OJ1742... 36 0.79
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 36 0.79
UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1; ... 34 1.8
UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to ENSANGP000... 34 2.4
UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsi... 33 4.2
UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1; ... 33 5.6
UniRef50_Q1LXZ3 Cluster: Novel protein similar to human and mous... 32 9.7
UniRef50_Q2H9J8 Cluster: Putative uncharacterized protein; n=1; ... 32 9.7
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 268 bits (657), Expect = 6e-71
Identities = 119/176 (67%), Positives = 140/176 (79%)
Frame = +2
Query: 11 FSTPVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 190
FS P G P+KRS RHRGKVK+FPKDDPSKPVHLTAF+GYKAGMTH+VRE DRPGS
Sbjct: 6 FSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGS 65
Query: 191 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 370
K+NKKE+VEAVTI+ETPPMV VG+VGY+ETP GLR TV+AEH+S++C+RRFYKNW+
Sbjct: 66 KVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKS 125
Query: 371 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIM 538
WQDE G+K +EKDF M +YC V+RVIAHTQM+LL RQKKAH+M
Sbjct: 126 KKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLM 181
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 239 bits (585), Expect = 3e-62
Identities = 108/176 (61%), Positives = 132/176 (75%)
Frame = +2
Query: 11 FSTPVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 190
FS P G P KRS RHRGKVK +P+DDPS+PVHLTAF+GYKAGMTH +RE RPG
Sbjct: 6 FSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGL 65
Query: 191 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 370
KI+K+E VEAVTI+ETPP+V VGVVGY+ TP GLR+ T++AEH+S++CRRRFYK+W+
Sbjct: 66 KISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKS 125
Query: 371 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIM 538
W+D G+K ++KDF M +YC V+RVI HTQMKLL RQKKAHIM
Sbjct: 126 KKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHIM 181
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 235 bits (574), Expect = 6e-61
Identities = 104/163 (63%), Positives = 124/163 (76%)
Frame = +2
Query: 11 FSTPVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 190
FS P G PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 191 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 370
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY NW
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125
Query: 371 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 499
WQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 126 KKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 188 bits (458), Expect = 7e-47
Identities = 89/176 (50%), Positives = 117/176 (66%)
Frame = +2
Query: 11 FSTPVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 190
FS P G P+K S H GKVK FPKDD SKPVHLT F+ +KA MTH++++ DRP S
Sbjct: 6 FSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKVDRPES 65
Query: 191 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 370
K+NKKE+VE V I+ETPPMV +G+VGYIE P GL V+AEH+S ++ FYKNW+
Sbjct: 66 KMNKKEVVEGVAIVETPPMVVMGIVGYIEIPRGLWTFKAVFAEHISGKSKKCFYKNWHSE 125
Query: 371 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIM 538
++G++ +E +FK M +YC V+ ++AHTQM LL QKKAH+M
Sbjct: 126 KKASTKYF------DMGKRQLEMEFKSMKKYCQVICIVAHTQMCLLSLHQKKAHLM 175
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 180 bits (438), Expect = 2e-44
Identities = 86/178 (48%), Positives = 116/178 (65%), Gaps = 3/178 (1%)
Frame = +2
Query: 11 FSTPVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 190
F P G P+KRSR+ RG+ ++FPKDDPS+ HLT+F+ YKAGMTH+VR+ DRPGS
Sbjct: 57 FEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVRDVDRPGS 116
Query: 191 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 370
K+NKKE+VE VTI+E PPMV VG+VGY +TP G + + TVWA H S + RRRFYKNW
Sbjct: 117 KVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRRRFYKNWKQS 176
Query: 371 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQ---KKAHI 535
+ GR + + K + ++RV+AHTQ++ L+ + KKAH+
Sbjct: 177 AQLAFTKRKQFARTTEGRLAEARTLKAFEKKADIIRVVAHTQLRKLRNNRVGVKKAHV 234
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 129 bits (312), Expect = 3e-29
Identities = 58/97 (59%), Positives = 77/97 (79%)
Frame = +2
Query: 53 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTII 232
K S +H+GKV FPKD SKPV+L+AF+GY+AGMTHVVR+ DRPGSK++KKE+VE VTI+
Sbjct: 1 KCSSQHQGKVTGFPKDGSSKPVYLSAFLGYQAGMTHVVRKVDRPGSKVHKKEVVEVVTIV 60
Query: 233 ETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR 343
ET P + VG VG ET GL+ +V+A+H+S +C+R
Sbjct: 61 ETMPFMTVGTVGCTETIWGLQTFKSVFAKHISNECKR 97
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 79.4 bits (187), Expect = 5e-14
Identities = 41/99 (41%), Positives = 57/99 (57%)
Frame = +2
Query: 20 PVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 199
P G P+KR+ R G+VK++P+ D S V + F G+KAGMTHV+ PGS
Sbjct: 7 PKKGSMGFGPRKRANRPYGRVKSWPETD-SDEVRVQGFAGWKAGMTHVMMRDLNPGSPSA 65
Query: 200 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWA 316
E+ +AVT++E PPM + V GY TP+G + WA
Sbjct: 66 GAEVRKAVTVVEVPPMRVLAVRGYKMTPYGKQTAGEAWA 104
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 78.2 bits (184), Expect = 1e-13
Identities = 38/103 (36%), Positives = 61/103 (59%)
Frame = +2
Query: 20 PVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 199
P G P+KR+ R G++ ++P+ + S+ + + F G+KAGMTHV+ P S
Sbjct: 7 PKRGSMGFSPRKRAIRPFGRITSWPETESSE-IRVQGFAGWKAGMTHVLMRDTNPHSTSA 65
Query: 200 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMS 328
+EI +AVT++E PPM + V GY TP+G++ +WA+ S
Sbjct: 66 GQEIRKAVTVVEVPPMKVLAVRGYHMTPYGMQTAGEIWADSSS 108
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 78.2 bits (184), Expect = 1e-13
Identities = 49/111 (44%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Frame = +2
Query: 20 PVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 199
P G P+KR+ R +VK +P+ D KPV L AF+GY+AGMTHV DRPG +
Sbjct: 9 PRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRPGRPTS 67
Query: 200 KKEIVEAVTIIETPPMVCVGVVGYIETPH-GLRALLTVWAEHMSE-DCRRR 346
KEI VTI+ETPPM V Y P+ G +L WA+ E + +RR
Sbjct: 68 GKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRR 118
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 74.5 bits (175), Expect = 1e-12
Identities = 41/108 (37%), Positives = 54/108 (50%)
Frame = +2
Query: 20 PVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 199
P G P+KR+ + ++P DD V L F GYKAGMTHVV D+ +
Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTE 64
Query: 200 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR 343
E VT++ETPPM V Y +TP+G + L VWA+ E R
Sbjct: 65 GMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDR 112
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 71.7 bits (168), Expect = 1e-11
Identities = 36/100 (36%), Positives = 52/100 (52%)
Frame = +2
Query: 20 PVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 199
P G P+KR+ R +++++P ++ V + F GYKAGMTH + D P S
Sbjct: 12 PRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTE 68
Query: 200 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 319
+EI VTI++ PPM + Y TP G R + WAE
Sbjct: 69 GEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAE 108
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 68.5 bits (160), Expect = 9e-11
Identities = 43/100 (43%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Frame = +2
Query: 20 PVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 199
P G L P+KR+ +V+++P D KP+ AF+GYK GMTHV+ DR
Sbjct: 9 PRRGSAGLRPRKRAASIVPRVRSWPSIDEVKPL---AFLGYKVGMTHVIMIDDREHVDTA 65
Query: 200 KKEIVEAVTIIETPPMVCVG--VVGYIETPHGLRALLTVW 313
+EI VT+IETPPMV +G V GY + G AL VW
Sbjct: 66 GQEIFVPVTVIETPPMVVLGARVYGY-DPNRGRYALTEVW 104
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 67.7 bits (158), Expect = 2e-10
Identities = 38/110 (34%), Positives = 55/110 (50%)
Frame = +2
Query: 20 PVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 199
P G YP+KR+R +V+ +P++ F GYK GM HV+ S
Sbjct: 7 PRRGSRAYYPRKRARSIVARVRRWPQNREG----FLGFAGYKVGMLHVIGVEMNKNSPFY 62
Query: 200 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF 349
+E A T+IE PP+ V V Y +TP+G + L VWA+ + +D R F
Sbjct: 63 GQERFYAATVIEVPPLKVVAVRVYEKTPYGKKTLCEVWAKDLPKDLERVF 112
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 63.7 bits (148), Expect = 3e-09
Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Frame = +2
Query: 20 PVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 199
P G P+KR++R +++++P++D V L AF YKAGM+H + D P S
Sbjct: 8 PRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPKSPNA 64
Query: 200 KKEIVEAVTIIETPPM-VC-VGVVGYIETPHGLRALLTVWAEHMSEDCRRR 346
+E+ +TI+E PP+ VC + V G E + L L VWA+++ ++ R+
Sbjct: 65 GQEVFTPITILEAPPINVCAIRVYGRNERNY-LTTLTEVWADNLDKELERK 114
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 62.5 bits (145), Expect = 6e-09
Identities = 34/84 (40%), Positives = 48/84 (57%)
Frame = +2
Query: 20 PVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 199
P G P+KR++ +++++PK+ V + F GYKAGMTH++ D PG N
Sbjct: 7 PRRGSLGFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG-LTN 62
Query: 200 KKEIVEAVTIIETPPMVCVGVVGY 271
KEI VTIIETPP+ G+ Y
Sbjct: 63 GKEIFMPVTIIETPPLRVFGIRAY 86
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 60.1 bits (139), Expect = 3e-08
Identities = 32/86 (37%), Positives = 46/86 (53%)
Frame = +2
Query: 14 STPVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSK 193
++P G L P+KRS + +P+ + P L F+GYK GMTHV D P S
Sbjct: 7 ASPRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMIDDWPNSP 65
Query: 194 INKKEIVEAVTIIETPPMVCVGVVGY 271
N KEI VT++E PP++ + + Y
Sbjct: 66 TNGKEIYMPVTVLEVPPIIPLALRAY 91
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 59.7 bits (138), Expect = 4e-08
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Frame = +2
Query: 47 PKKRSRRHRGKVKAFPK--DDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 220
P+ R+R + K++ + + D P + F+G+KAGM+H+V DRP S EI
Sbjct: 16 PRVRARSQKPKMRNWAELGDQPK----IQGFVGFKAGMSHIVMVDDRPHSATEGMEISVP 71
Query: 221 VTIIETPPMVCVGVVGYIETPHGLRALLTVW 313
VTI+E P M G+ Y ++P+G + + W
Sbjct: 72 VTIVEAPQMHVAGIRVYDDSPYGKKVIGEAW 102
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 59.7 bits (138), Expect = 4e-08
Identities = 32/101 (31%), Positives = 54/101 (53%)
Frame = +2
Query: 17 TPVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKI 196
+P G P+ R++ +++A+PK D +P + A G+KAG +V DR
Sbjct: 8 SPRRGSLAYSPRVRAKSMEARIRAWPKLDSEEP-KILAHCGFKAGCVQIVSIDDREKVPN 66
Query: 197 NKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 319
K++V T++ TPP++ +G+ GY + GL A V+AE
Sbjct: 67 AGKQLVSLGTVLVTPPVLILGIRGYSKDHDGLHAEFDVYAE 107
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 58.4 bits (135), Expect = 1e-07
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +2
Query: 83 KAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGV 262
+A K KPV L ++ YKAGM+H + DRP + + KEI VT+++ PP++ +G+
Sbjct: 48 EAVNKGIAPKPV-LLGYVAYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGL 106
Query: 263 VGY-IETPHGLRALLTVW 313
GY I HGL + VW
Sbjct: 107 RGYKIHPMHGLLSFGEVW 124
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 53.6 bits (123), Expect = 3e-06
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Frame = +2
Query: 29 GLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKE 208
G YP+ R++ +++++P + S PV + F G+K GMTHV R S +
Sbjct: 10 GSMAYYPRVRAKSIEPRIRSWP--EISGPVKVQGFAGFKVGMTHVEMVDYRKTSVTAGQP 67
Query: 209 IVEAVTIIETPPMVCVGVVGYIETPHG-LRALLTVWAEHMSED 334
I VT+IE PP+ +G+ Y E G + + W +++ ++
Sbjct: 68 IFVPVTVIEVPPLDVIGIRLYDEDEEGNMVVVYEKWTQNLDKE 110
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 52.8 bits (121), Expect = 5e-06
Identities = 31/108 (28%), Positives = 54/108 (50%)
Frame = +2
Query: 11 FSTPVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 190
FS P G P+ R+R +++ +P+ +P L A G+KAG +V DR +
Sbjct: 6 FSQPRRGSLAYSPRGRARSMEARIRGWPERQ-GEP-RLLAHAGFKAGCIQIVSIDDREHT 63
Query: 191 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSED 334
K++V T++ TPP+ +G+ GY + +G V+AE + +
Sbjct: 64 PNAGKQLVSLGTVLVTPPLHVLGMRGYSKGHYGRHVKFDVFAEDLPRE 111
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 51.6 bits (118), Expect = 1e-05
Identities = 31/110 (28%), Positives = 55/110 (50%)
Frame = +2
Query: 26 MGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKK 205
MG W P+KR+ R ++K +PK + KP+ AF YK GMTH + IN +
Sbjct: 14 MGFW---PRKRASRIYPRIKTWPKIEEIKPL---AFAAYKVGMTHTI-------LNINGE 60
Query: 206 EIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 355
+ VT++E P ++ +G Y + L+ + +++ + + R+ K
Sbjct: 61 RVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLYFNDLPQYVFRKIPK 110
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 46.4 bits (105), Expect = 4e-04
Identities = 30/100 (30%), Positives = 47/100 (47%)
Frame = +2
Query: 11 FSTPVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 190
F P +G PKKRS R K + + +++ F K THV+R + S
Sbjct: 6 FEHPRIGSLGFLPKKRSNRIFPSSKTYKEIIHIYYPYISQFASLKVASTHVLRICNIVSS 65
Query: 191 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTV 310
K + I++ VT++E PP+ VG+ Y + L L T+
Sbjct: 66 KSYQNPIIDEVTLMECPPIEVVGLCAYALSSGHLVKLKTI 105
>UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3; n=1;
Mus musculus|Rep: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3 - Mus
musculus (Mouse)
Length = 109
Score = 39.9 bits (89), Expect = 0.037
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +2
Query: 68 HRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKK 205
HR + K FPK+D K HL F+ +A MT+ V E +R G K +K
Sbjct: 8 HRIQAKDFPKEDLPKSAHLIVFLVSRAVMTYFVWEINRSGPKWTRK 53
>UniRef50_Q69NC6 Cluster: Putative uncharacterized protein
OJ1742_G01.32; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OJ1742_G01.32 - Oryza sativa subsp. japonica (Rice)
Length = 100
Score = 35.5 bits (78), Expect = 0.79
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 202 ERDRGGCHHHRDSSDGLCRCCWIH*DPSWTTRSVD 306
E DRG CHH+ S GLCR C + P+ T V+
Sbjct: 36 EGDRGCCHHYLTGSPGLCRRCPLRAHPAATGFEVE 70
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 35.5 bits (78), Expect = 0.79
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 403 FLTGFSESLLLAFVPVFVEATSTVFRHMLRPDSQQ 299
F F E LL F+PV VE++S F + PDS Q
Sbjct: 139 FTRVFGEGFLLGFIPVLVESSSDFFTQVFSPDSGQ 173
>UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1205
Score = 34.3 bits (75), Expect = 1.8
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 53 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH--VVREPDRPGSKINKKEIVEAVT 226
K +++ K+K +++ K + AFI A ++ +R DR ++N I + T
Sbjct: 19 KANKKKAAKLKKLEQNEALKGRNPKAFISQAAYASNRLTIRNLDREAKRVNLPVIDRSGT 78
Query: 227 IIETPPMVCVGVVG 268
+ETPP V + VVG
Sbjct: 79 AVETPPYV-IAVVG 91
>UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to
ENSANGP00000006197; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ENSANGP00000006197 - Nasonia
vitripennis
Length = 1307
Score = 33.9 bits (74), Expect = 2.4
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -2
Query: 380 PSSCICTSFCRSDVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSEESR 231
PS+ I T SD++ L P QS+ V+ +GS+ HR K SEE R
Sbjct: 840 PSASINTKKYESDIEILSN---PSQSSIEVLDDGSKSTTPHRKKSSEERR 886
>UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsis
invicta virus 1|Rep: Structural polyprotein - Solenopsis
invicta virus 1
Length = 1137
Score = 33.1 bits (72), Expect = 4.2
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -3
Query: 247 HRRSLDDGDSLHDLFLVDF*TGTVRFSNHVGHTGLITDKSSQMNRFARVV 98
HRR + ++ D+ LVD T++ VG GLITD +S ++ A V
Sbjct: 475 HRRDVTAARAIADMILVDERDATMQVQAEVGGQGLITDIASTVSAVAGAV 524
>UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1;
Sulfurovum sp. NBC37-1|Rep: Putative uncharacterized
protein - Sulfurovum sp. (strain NBC37-1)
Length = 135
Score = 32.7 bits (71), Expect = 5.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 404 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIM 538
WQD K I+KD+ + YC +R+ H +L ++ K HI+
Sbjct: 29 WQDNSDAKYIQKDWNGAMLYCRQLRLAGHNDWRLPSIKELK-HIL 72
>UniRef50_Q1LXZ3 Cluster: Novel protein similar to human and mouse
F-box protein, helicase, 18; n=2; Danio rerio|Rep: Novel
protein similar to human and mouse F-box protein,
helicase, 18 - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 992
Score = 31.9 bits (69), Expect = 9.7
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 188 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRR 346
S+ N EAV + E P + +VG +E GL ++ +W SED R++
Sbjct: 695 SRCNVTVFSEAVRLTEVNPNCKICIVGGVEN-FGLDKIMDIWVLTQSEDTRKK 746
>UniRef50_Q2H9J8 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 674
Score = 31.9 bits (69), Expect = 9.7
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +2
Query: 221 VTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSE 331
VT+ TPPM+ G V +E GL L VW H SE
Sbjct: 12 VTVRGTPPMLLKGTVSAVEAGTGL-TLSNVWMLHTSE 47
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 556,735,389
Number of Sequences: 1657284
Number of extensions: 11291159
Number of successful extensions: 27599
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 26792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27581
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34572633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -