Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0649
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   221   2e-58
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   219   2e-57
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847...    30   1.0  
05_04_0324 - 20273797-20274261                                         29   2.4  
04_03_0986 + 21456241-21456852,21456937-21457110,21457216-21457800     28   4.1  
01_05_0125 - 18382402-18382761,18382863-18383036                       28   4.1  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  221 bits (541), Expect = 2e-58
 Identities = 101/177 (57%), Positives = 131/177 (74%), Gaps = 1/177 (0%)
 Frame = +2

Query: 11  FSTPVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 190
           F  P  G     P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGS 65

Query: 191 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 370
           K++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW   
Sbjct: 66  KLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125

Query: 371 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIM 538
                      +  + G+K I+   +KM +Y S+VRVIAHTQ++ +K  +QKKAH+M
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLM 182


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  219 bits (534), Expect = 2e-57
 Identities = 100/177 (56%), Positives = 130/177 (73%), Gaps = 1/177 (0%)
 Frame = +2

Query: 11  FSTPVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 190
           F  P  G     P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKPGS 65

Query: 191 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 370
           K++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW   
Sbjct: 66  KLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125

Query: 371 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIM 538
                      +  + G+K I+   +KM +Y SVVRVI HTQ++ +K  +QKKAH+M
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLM 182


>01_06_0083 +
           26283492-26283756,26284255-26284467,26284620-26284771,
           26284884-26285157,26285277-26285485
          Length = 370

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 430 NRKRFQEDDPLL*CCKSHCPHSNEAV--KTATKEG 528
           N +RF  +DPLL CC  H P+   A   +TAT  G
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGATCDRTATVWG 331


>05_04_0324 - 20273797-20274261
          Length = 154

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +2

Query: 89  FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGV 262
           FP D+P K VH+    G  + +T ++ E  P +    +N     EA   +  P   CVGV
Sbjct: 60  FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117

Query: 263 VGYIETPHGLRAL 301
           +  ++  H LR L
Sbjct: 118 ISVLQ--HQLRQL 128


>04_03_0986 + 21456241-21456852,21456937-21457110,21457216-21457800
          Length = 456

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 2   QKIFSTPVMGLWELYPKKRSRRHRGKVKAFPKDDPS--KPVHLTAFIGYKA 148
           + +  TP + L+E++P   +R+    ++AF   +P+  +  H   FIGY A
Sbjct: 185 EALADTPDVVLYEIWPPPDTRKQGEPLRAFMDIEPTRKRSGHEDIFIGYHA 235


>01_05_0125 - 18382402-18382761,18382863-18383036
          Length = 177

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 344 DVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSE 240
           ++ +L    PPR ST R+V E   C+ + R + +E
Sbjct: 47  ELGALLPNLPPRASTTRIVEEAIACVGELRARTAE 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,196,714
Number of Sequences: 37544
Number of extensions: 320850
Number of successful extensions: 747
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)