Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0649
         (540 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               251   3e-67
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         227   4e-60
SB_59107| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_54689| Best HMM Match : DUF1525 (HMM E-Value=6.3)                   28   5.6  
SB_36686| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_52907| Best HMM Match : RVT_1 (HMM E-Value=2.4e-17)                 27   7.4  
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)                     27   7.4  
SB_11280| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_55406| Best HMM Match : DUF1534 (HMM E-Value=0.45)                  27   9.8  
SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  251 bits (614), Expect = 3e-67
 Identities = 113/176 (64%), Positives = 134/176 (76%)
 Frame = +2

Query: 11  FSTPVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 190
           F  P  G     P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE ++PGS
Sbjct: 5   FEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVEKPGS 64

Query: 191 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 370
           K+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+RRFYKNW   
Sbjct: 65  KLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRFYKNWCNS 124

Query: 371 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIM 538
                      W D+ G+KSIE+DF  M +YC V+RVI HTQ KLLK RQKKAHIM
Sbjct: 125 KKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQQKLLKMRQKKAHIM 180


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  227 bits (555), Expect = 4e-60
 Identities = 101/162 (62%), Positives = 122/162 (75%)
 Frame = +2

Query: 11  FSTPVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 190
           F  P  G     P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE ++PGS
Sbjct: 53  FEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVEKPGS 112

Query: 191 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 370
           K+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+RRFYKNW   
Sbjct: 113 KLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRFYKNWCNS 172

Query: 371 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQ 496
                      W D+ G+KSIE+DF  M +YC V+RVI HTQ
Sbjct: 173 KKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQ 214


>SB_59107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 62  RRHRGKVKAFPKDDPSKPVHL 124
           R HR  + AFP D P+ PV L
Sbjct: 7   RAHRSSLHAFPPDGPAHPVSL 27


>SB_54689| Best HMM Match : DUF1525 (HMM E-Value=6.3)
          Length = 298

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +2

Query: 41  LYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 178
           ++P  ++ +   +V  +P  D    +H+ AF+G+K+  T  +  P+
Sbjct: 69  VHPSSQNVKTSLRVPIYPPKDIQVDLHIKAFVGHKSRFTMYIPCPE 114


>SB_36686| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 236 TPPMVCVGVVGYIETPHGLRAL-LTVWAEHMSEDCRRRFY 352
           TP  +C+G  GY+ T   L+ L LTV    M E  + +++
Sbjct: 301 TPGRLCIGSYGYVATQQFLQLLRLTVLPPVMIEKAKNQYH 340


>SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 62  RRHRGKVKAFPKDDPSKPVHL 124
           R HR  + AFP D P+ PV L
Sbjct: 15  RAHRSSLHAFPPDGPAHPVSL 35


>SB_52907| Best HMM Match : RVT_1 (HMM E-Value=2.4e-17)
          Length = 344

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 47  PKKRSRRHRGKVKAFPKDDPSKP 115
           PK   RR+R K+   PK DP  P
Sbjct: 279 PKHNIRRNRRKLNMLPKPDPETP 301


>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 718

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 484 NDSYNTTVADHLLEIFFY 431
           NDSYN T+ D + E+F Y
Sbjct: 529 NDSYNGTINDRVPEVFLY 546


>SB_11280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = -3

Query: 391 FSESLLLAFVPVFVEATSTVFRHMLRPDSQQSA*SMRGLNVSNNTDTNHRRSLDDGDSLH 212
           FS+ L  AFV +F    + +     R  ++ +  + +GL+ S+NT  N+R+S    + L 
Sbjct: 316 FSKKLRQAFVRMFEAIWAKISGANDRNLNRINPDTSQGLDRSSNTVFNYRKSFATSNLLS 375

Query: 211 DLFLVD 194
           D   +D
Sbjct: 376 DEIWID 381


>SB_55406| Best HMM Match : DUF1534 (HMM E-Value=0.45)
          Length = 248

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 170 EPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHG 289
           EP  P S + +  +  A TI  TPP     V    E PHG
Sbjct: 201 EPPPPYSTLERSPVTIADTIDITPPSYEEAVQSSSEEPHG 240


>SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 50  KKRSRRHRGKVKAFPKDDPSKPVHLTAFI-GYKAGMTHVVREPD 178
           +K  ++ + +  + PKD  S P HL A +  +   + H+VR  D
Sbjct: 384 RKSKKKEKRQSSSRPKDADSSPQHLAASVESFANYLKHLVRPED 427


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,469,115
Number of Sequences: 59808
Number of extensions: 361438
Number of successful extensions: 812
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)