Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0649
(540 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 254 2e-68
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 254 2e-68
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 254 2e-68
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 254 2e-68
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 235 2e-62
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 235 2e-62
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 72 2e-13
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 72 2e-13
AF003146-5|AAB54199.1| 299|Caenorhabditis elegans Hypothetical ... 30 0.93
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne... 29 2.1
Z68748-4|CAD27622.1| 617|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z68748-3|CAA92953.2| 615|Caenorhabditis elegans Hypothetical pr... 27 8.6
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 254 bits (623), Expect = 2e-68
Identities = 112/176 (63%), Positives = 137/176 (77%)
Frame = +2
Query: 11 FSTPVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 190
FS P G PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 191 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 370
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY NW
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125
Query: 371 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIM 538
WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH++
Sbjct: 126 KKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLV 181
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 254 bits (623), Expect = 2e-68
Identities = 112/176 (63%), Positives = 137/176 (77%)
Frame = +2
Query: 11 FSTPVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 190
FS P G PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 191 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 370
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY NW
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125
Query: 371 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIM 538
WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH++
Sbjct: 126 KKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLV 181
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 254 bits (623), Expect = 2e-68
Identities = 112/176 (63%), Positives = 137/176 (77%)
Frame = +2
Query: 11 FSTPVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 190
FS P G PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 191 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 370
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY NW
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125
Query: 371 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIM 538
WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH++
Sbjct: 126 KKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLV 181
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 254 bits (623), Expect = 2e-68
Identities = 112/176 (63%), Positives = 137/176 (77%)
Frame = +2
Query: 11 FSTPVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 190
FS P G PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 191 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 370
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY NW
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125
Query: 371 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIM 538
WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH++
Sbjct: 126 KKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLV 181
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 235 bits (574), Expect = 2e-62
Identities = 104/163 (63%), Positives = 124/163 (76%)
Frame = +2
Query: 11 FSTPVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 190
FS P G PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 191 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 370
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY NW
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125
Query: 371 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 499
WQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 126 KKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 235 bits (574), Expect = 2e-62
Identities = 104/163 (63%), Positives = 124/163 (76%)
Frame = +2
Query: 11 FSTPVMGLWELYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 190
FS P G PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 191 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 370
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY NW
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125
Query: 371 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 499
WQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 126 KKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 72.1 bits (169), Expect = 2e-13
Identities = 30/45 (66%), Positives = 39/45 (86%)
Frame = +2
Query: 404 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIM 538
WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH++
Sbjct: 39 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLV 83
Score = 35.1 bits (77), Expect = 0.033
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2
Query: 11 FSTPVMGLWELYPKKRSRRHRGKVKAFPK 97
FS P G PKKRSR +RG++KAF K
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 72.1 bits (169), Expect = 2e-13
Identities = 30/45 (66%), Positives = 39/45 (86%)
Frame = +2
Query: 404 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIM 538
WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH++
Sbjct: 39 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLV 83
Score = 35.1 bits (77), Expect = 0.033
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2
Query: 11 FSTPVMGLWELYPKKRSRRHRGKVKAFPK 97
FS P G PKKRSR +RG++KAF K
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
>AF003146-5|AAB54199.1| 299|Caenorhabditis elegans Hypothetical
protein F56F4.2 protein.
Length = 299
Score = 30.3 bits (65), Expect = 0.93
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 236 TPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWY 364
T P + GY++ G+R VW E S+ + KNW+
Sbjct: 201 TDPNGYFDIAGYVDQSSGVRGRFWVWHECFSQKYHKDPCKNWF 243
>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
neurexin-like protein 1 protein.
Length = 1655
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 217 GCHHHRDSSDGLCRCCWIH*DPSWTTRSVDCLGGAYV*RLSTSLLQKLVQMQEEGF 384
GC + G C W + DPS T + DC +Y ++ L + V M+ GF
Sbjct: 1160 GCSSITCLNGGHCSVAWANTDPSAATTTCDCSRTSYT--GASCSLDEGVHMERSGF 1213
>Z68748-4|CAD27622.1| 617|Caenorhabditis elegans Hypothetical
protein F13H10.3b protein.
Length = 617
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -3
Query: 361 PVFVEATSTVFRHMLR--PDSQQSA 293
P F E T +VFRH R PD + SA
Sbjct: 3 PFFAEFTESVFRHFRRNEPDEENSA 27
>Z68748-3|CAA92953.2| 615|Caenorhabditis elegans Hypothetical
protein F13H10.3a protein.
Length = 615
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -3
Query: 361 PVFVEATSTVFRHMLR--PDSQQSA 293
P F E T +VFRH R PD + SA
Sbjct: 3 PFFAEFTESVFRHFRRNEPDEENSA 27
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,781,653
Number of Sequences: 27780
Number of extensions: 269910
Number of successful extensions: 650
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -