Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0648
         (570 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   2e-12
SB_7153| Best HMM Match : 6PF2K (HMM E-Value=1.9e-25)                  52   3e-07
SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9)                   29   2.0  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_1621| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.0  
SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)             29   2.0  
SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)                   29   3.5  
SB_20537| Best HMM Match : Vicilin_N (HMM E-Value=2.6)                 28   4.7  
SB_16219| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_55522| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_22906| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_6746| Best HMM Match : rve (HMM E-Value=2.4)                        27   8.2  

>SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1259

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
 Frame = +2

Query: 272  VFDCSEYRRRHM-ALYGSHDIFRADNQQGSAIRRQSAHEAVQDAVIWLKDGNSVAIFDVT 448
            VF   +YRRR +      H  F  +N  G  IR + A   + D V WLKD   VAIFD T
Sbjct: 886  VFSLGDYRRRMLEGSQFDHSFFDPNNPNGMNIREECAKLVLADIVEWLKDKGKVAIFDAT 945

Query: 449  NITREQRRELSDYCLSDMGFRILFIECVCEDQELLERNII 568
            N TR++R  + + C S    R++F+E V +D  +++ N++
Sbjct: 946  NSTRKRRETIIEKCQS-YECRVMFLESVVDDPVIVKSNVM 984


>SB_7153| Best HMM Match : 6PF2K (HMM E-Value=1.9e-25)
          Length = 301

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 23/54 (42%), Positives = 32/54 (59%)
 Frame = +2

Query: 272 VFDCSEYRRRHMALYGSHDIFRADNQQGSAIRRQSAHEAVQDAVIWLKDGNSVA 433
           VF+  EYRR+ + +   HD F+ DNQ+  AIRRQ A + + D   WL +G   A
Sbjct: 70  VFNVGEYRRKAVGMDKLHDFFKVDNQEAQAIRRQCAIDCLNDVSSWLDEGVQAA 123


>SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9)
          Length = 292

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +1

Query: 43  REDPRTRE**WRPGSSTGHGNDGGQRETSSTRND 144
           R+ P +R+  WRP SS G GN  G    SS+R D
Sbjct: 26  RDAPYSRDENWRPASSRGSGNQDGY---SSSRFD 56


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +1

Query: 43  REDPRTRE**WRPGSSTGHGNDGGQRETSSTRND 144
           R+ P +R+  WRP SS G GN  G    SS+R D
Sbjct: 623 RDAPYSRDENWRPASSRGSGNQDGY---SSSRFD 653


>SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1089

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 100  GNDGGQRETSSTRNDPLASYQSICAAPHSPGWSASS 207
            G++  + ++ STR  P+ S  +I + P  PG S+S+
Sbjct: 905  GSESSRGDSGSTRTSPIRSTSTIPSTPPPPGGSSST 940


>SB_1621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 28/128 (21%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
 Frame = +2

Query: 2   NATVSSHETRSGFSEKTLVQENSNGARDLARATAMMEDKEKLLAPATIRSRRISQFAPLL 181
           N+  S+   +S  S ++++  + + ++      + +++KE  +AP+T+R +R     PL 
Sbjct: 353 NSAKSNRSQKSNRSIRSVISRHLSNSQTHQLQLSNLQEKEAEVAPSTLRDQR-----PLE 407

Query: 182 IALVGLPARGKSQLAHRLA---RHLNWNGESTKVFDCSEYRRRHMALYGSHDIFRADNQQ 352
            A V       SQ  H+      H   +G + +  + S  R+ H+           +N Q
Sbjct: 408 KATVHRETATTSQTVHKKQYEYLHKQLDGPTERTQEVSLERKVHINRMAMEPQVPFENFQ 467

Query: 353 GSAIRRQS 376
            S++ R S
Sbjct: 468 RSSMPRGS 475


>SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)
          Length = 1182

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 423 FPSLSQMTASCTASCAL*RRIADPC-WLSARKMSWLPYKAIC 301
           FPS  +    C  +    R++ D C W   R+M+W   +A C
Sbjct: 103 FPSRLKRAIGCIYASIRPRKVNDSCYWADTREMAWNDARAAC 144


>SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)
          Length = 807

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +2

Query: 368 RQSAHEAVQDAVIWLKDGNSVAIFDVTNITREQRRELSDY 487
           RQ+ +E    AV+W +DG+S A   VTN+  ++ + + ++
Sbjct: 210 RQAKNEGCDIAVVW-QDGDSTAKKSVTNVFGDEPQRVCEF 248


>SB_20537| Best HMM Match : Vicilin_N (HMM E-Value=2.6)
          Length = 624

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 194 GLPARGK-SQLAHRLARHLNWNGESTKVFDCSEYRRRH 304
           G   RGK  Q++HR  RH NWN    +  +  E+++ H
Sbjct: 254 GFQDRGKYEQVSHRGKRH-NWNYHDDRGVERQEFKQHH 290


>SB_16219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -3

Query: 433 SNTVPILEPDDGV--LYGLVCALTTNCGPLLVVRAEDVVAAVQGHMPATILAAIEHFGAF 260
           +NT P +E  +    L+  VCAL     P+ VV   D V    G MP  +  A  +FG  
Sbjct: 225 NNTGPSVEDINVTMTLFLTVCALLICWIPIAVVDLIDFVRNSLGSMPRLVYLAYLYFGQL 284

Query: 259 SIPV 248
           S  +
Sbjct: 285 STAI 288


>SB_55522| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 21/63 (33%), Positives = 29/63 (46%)
 Frame = +1

Query: 154 SYQSICAAPHSPGWSASSWQESAGTPTCQTSQLEWRKHQSVRLQRVSSPAYGLVRQPRHL 333
           SYQ+IC A HS   S +  +E A     +  + +  K +  R   +SSP   L      L
Sbjct: 104 SYQNICCAEHS---SRNRNKERANNMAARRIETK-DKDKGNRTSPISSPGRTLFASISGL 159

Query: 334 PRG 342
           PRG
Sbjct: 160 PRG 162


>SB_22906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 79  PGSSTGHGNDGGQRETSSTRNDPLASYQSICAAPHS 186
           PG+ +G G  GG   +S T   P +    +  A HS
Sbjct: 74  PGTGSGSGGSGGTSSSSDTPTSPSSKTLPLYVACHS 109


>SB_6746| Best HMM Match : rve (HMM E-Value=2.4)
          Length = 488

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 469 ALLPSYIGNVKYSNTVPILEPDD 401
           AL PS+  N++ S  +P+ EPD+
Sbjct: 282 ALTPSHFLNIRPSTNIPVEEPDE 304


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,216,573
Number of Sequences: 59808
Number of extensions: 371095
Number of successful extensions: 1077
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)