Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0648
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-18|AAF60424.2|  450|Caenorhabditis elegans Hypothetical...   114   5e-26
AC006708-17|AAK68884.2|  435|Caenorhabditis elegans Hypothetical...   114   5e-26
U41558-2|AAK39245.2|  457|Caenorhabditis elegans Hypothetical pr...   105   3e-23
Z75711-2|CAB00033.2|  425|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z81585-6|CAB04684.2|  482|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z83120-2|CAB05586.1|  883|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched rela...    28   5.4  
Z69637-4|CAA93469.1|  539|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z30215-3|CAA82935.1|  325|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AC006656-2|AAF39880.1|  326|Caenorhabditis elegans Hypothetical ...    27   7.2  
Z69634-7|CAA93453.2|  248|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AC006708-18|AAF60424.2|  450|Caenorhabditis elegans Hypothetical
           protein Y110A7A.6a protein.
          Length = 450

 Score =  114 bits (274), Expect = 5e-26
 Identities = 59/138 (42%), Positives = 90/138 (65%), Gaps = 7/138 (5%)
 Frame = +2

Query: 173 PLLIALVGLPARGKSQLAHRLARHLNWNGESTKVFDCSEYRRR--HMALYGSHDIFRADN 346
           P +IALVGLPARGK+ ++H+L R+LNW G  TK F+  EYRRR  ++   G ++ F  +N
Sbjct: 29  PNVIALVGLPARGKTYISHKLCRYLNWIGIKTKAFNVGEYRRRACNLEEEGENEFFSPNN 88

Query: 347 QQGSAIRRQSAHEAVQDAVIWL--KDGNSVAIFDVTNITREQRRELSDYC---LSDMGFR 511
            +G  IR + A  A++D   +L  K+G  VAI D TN TR++R+ L ++C   + +  FR
Sbjct: 89  ARGQKIRDECAKLAIEDMGRYLDNKEG-EVAILDATNTTRDRRKLLMEFCRNMMHEPPFR 147

Query: 512 ILFIECVCEDQELLERNI 565
           + F+E VC+D +++  NI
Sbjct: 148 VFFVESVCDDPDIINSNI 165


>AC006708-17|AAK68884.2|  435|Caenorhabditis elegans Hypothetical
           protein Y110A7A.6b protein.
          Length = 435

 Score =  114 bits (274), Expect = 5e-26
 Identities = 59/138 (42%), Positives = 90/138 (65%), Gaps = 7/138 (5%)
 Frame = +2

Query: 173 PLLIALVGLPARGKSQLAHRLARHLNWNGESTKVFDCSEYRRR--HMALYGSHDIFRADN 346
           P +IALVGLPARGK+ ++H+L R+LNW G  TK F+  EYRRR  ++   G ++ F  +N
Sbjct: 35  PNVIALVGLPARGKTYISHKLCRYLNWIGIKTKAFNVGEYRRRACNLEEEGENEFFSPNN 94

Query: 347 QQGSAIRRQSAHEAVQDAVIWL--KDGNSVAIFDVTNITREQRRELSDYC---LSDMGFR 511
            +G  IR + A  A++D   +L  K+G  VAI D TN TR++R+ L ++C   + +  FR
Sbjct: 95  ARGQKIRDECAKLAIEDMGRYLDNKEG-EVAILDATNTTRDRRKLLMEFCRNMMHEPPFR 153

Query: 512 ILFIECVCEDQELLERNI 565
           + F+E VC+D +++  NI
Sbjct: 154 VFFVESVCDDPDIINSNI 171


>U41558-2|AAK39245.2|  457|Caenorhabditis elegans Hypothetical
           protein K02B2.1 protein.
          Length = 457

 Score =  105 bits (251), Expect = 3e-23
 Identities = 54/137 (39%), Positives = 83/137 (60%), Gaps = 6/137 (4%)
 Frame = +2

Query: 173 PLLIALVGLPARGKSQLAHRLARHLNWNGESTKVFDCSEYRRRHM----ALYGSH-DIFR 337
           P +I +VGLPARGK+ ++ +L R+L W G +TKVF+  EYRR       A++G++   F 
Sbjct: 29  PNVIVMVGLPARGKTYISKKLCRYLKWTGFTTKVFNVGEYRRSDANAADAIHGANASFFS 88

Query: 338 ADNQQGSAIRRQSAHEAVQDAVIWLKDG-NSVAIFDVTNITREQRRELSDYCLSDMGFRI 514
            +N     +R +SA  A++D   +L  G   VAIFD TN T+++RR + D+C      R 
Sbjct: 89  PNNADALKVRAESARRAMEDMADYLNSGTGGVAIFDATNTTKDRRRIIIDFC-KKQRLRC 147

Query: 515 LFIECVCEDQELLERNI 565
            FIE VC+D  +++ N+
Sbjct: 148 FFIESVCDDPAIIDCNV 164


>Z75711-2|CAB00033.2|  425|Caenorhabditis elegans Hypothetical
           protein K02B12.3 protein.
          Length = 425

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +2

Query: 302 HMALYGSHDIFRADNQQGSAIRRQSAHEAVQDAVIWLKDGNSV 430
           H+ ++ +  +FRA+N+    I    AH+A  D + + KD  ++
Sbjct: 167 HIRIWNAQIVFRAENEDAQPILTIQAHKADVDDIDFSKDSKTI 209


>Z81585-6|CAB04684.2|  482|Caenorhabditis elegans Hypothetical
           protein T05E12.6a protein.
          Length = 482

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 6/104 (5%)
 Frame = -3

Query: 481 AQLTALLPSYIGNVKYSNTVPIL----EPDDGV--LYGLVCALTTNCGPLLVVRAEDVVA 320
           AQLTAL   YIGN  + +  P++    E    +   Y + C     C P+ +     VVA
Sbjct: 222 AQLTAL---YIGNSGFISDCPMIVLDYENTKNITQFYSIYCMKDQECEPMSMDARNSVVA 278

Query: 319 AVQGHMPATILAAIEHFGAFSIPVEMSGKSVCQLTLATSWQTNQ 188
               H PA +   +       +     G     L  A   Q +Q
Sbjct: 279 LQLYHRPAAVHYVLTALNGAGVVKAYDGGGNSNLLAAYEVQNSQ 322


>Z83120-2|CAB05586.1|  883|Caenorhabditis elegans Hypothetical
           protein R06A4.4a protein.
          Length = 883

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 496 REAVVAQLTALLPSYIGNVKYSNTVPILEPDD 401
           R  V+  L  L+P  +G+++YS T P L+ +D
Sbjct: 286 RTMVLPHLDKLIPVLLGSMRYSETDPALKAND 317


>AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched related
           family protein 15 protein.
          Length = 840

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 434 IFDVTNITREQRRELSDYCLSDMGFRILFIECVC 535
           +FD  N   +Q  EL    LS +G  I+ +  +C
Sbjct: 660 VFDENNFYSDQMLELQSTILSSLGTAIILLSAIC 693


>Z69637-4|CAA93469.1|  539|Caenorhabditis elegans Hypothetical
           protein F35G2.4 protein.
          Length = 539

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 363 FVVKAHTRPYKTPSSGSRMGTVLLYLTLP 449
           F  K     +KT ++G+R+ TVL Y++ P
Sbjct: 422 FARKEEKNAFKTLNTGNRIATVLFYMSQP 450


>Z30215-3|CAA82935.1|  325|Caenorhabditis elegans Hypothetical
           protein F40F12.3 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 357 PQFVVKAHTRPYKTPSSGSRMGTVLLYLTLP 449
           P  +++ HT P  TPS  +R   VL  L LP
Sbjct: 278 PHNLLELHTTPLTTPSFLTRFSIVLAILILP 308


>AC006656-2|AAF39880.1|  326|Caenorhabditis elegans Hypothetical
           protein H12I13.2 protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 365 RRQSAHEAVQDAVIWLKDGNSVAI 436
           ++Q A E +Q+ VIWLKD    A+
Sbjct: 161 QQQDASEMLQNIVIWLKDAVDAAV 184


>Z69634-7|CAA93453.2|  248|Caenorhabditis elegans Hypothetical
           protein B0001.4 protein.
          Length = 248

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 173 PLLIALVGLPARGKSQLAHRLARHLNWNGEST 268
           PLLI + G  + GKS +  R+  +LN N + +
Sbjct: 8   PLLIGVAGGTSCGKSTIVERIIENLNANAKQS 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,926,257
Number of Sequences: 27780
Number of extensions: 265814
Number of successful extensions: 873
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)