Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0648
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   4.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   6.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   6.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   6.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   6.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.5  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   8.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.6  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 422 NSVAIFDVTNITREQRRELSDYCLSDMGFRILFIECVCEDQELLE 556
           N V + D+ N+ R   R   D      GFR+  +  +CED   L+
Sbjct: 198 NPVVLDDMQNVLRFWLRRGFD------GFRVDALPYICEDMRFLD 236


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 422 NSVAIFDVTNITREQRRELSDYCLSDMGFRILFIECVCEDQELLE 556
           N V + D+ N+ R   R   D      GFR+  +  +CED   L+
Sbjct: 198 NPVVLDDMQNVLRFWLRRGFD------GFRVDALPYICEDMRFLD 236


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 263 STKVFDCSEYRRRHMALYGSHDIFRADN 346
           +TK F  SEY   ++   G  DIF  ++
Sbjct: 280 NTKPFMKSEYGANNVQYQGVQDIFNTES 307


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 397 VLYGLVCALTTNCGPLLVVRAEDV 326
           +++ ++C LT     + +VRAED+
Sbjct: 31  LIFTILCILTLALTLVTLVRAEDI 54


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 397 VLYGLVCALTTNCGPLLVVRAEDV 326
           +++ ++C LT     + +VRAED+
Sbjct: 31  LIFTILCILTLALTLVTLVRAEDI 54


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 397 VLYGLVCALTTNCGPLLVVRAEDV 326
           +++ ++C LT     + +VRAED+
Sbjct: 31  LIFTILCILTLALTLVTLVRAEDI 54


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 397 VLYGLVCALTTNCGPLLVVRAEDV 326
           +++ ++C LT     + +VRAED+
Sbjct: 31  LIFTILCILTLALTLVTLVRAEDI 54


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 186 PWLVCQLVARVSWHTD 233
           P  V   V  +SWHTD
Sbjct: 127 PSFVADFVKVLSWHTD 142


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 233 LARHLNWNGESTKVFDCSEYRR 298
           L+ + N+N  + K   C+ YR+
Sbjct: 85  LSNNYNYNNNNYKKLYCNNYRK 106


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -3

Query: 391 YGLVCALTTNCGPLLVVRAEDVVAAVQGHM 302
           +G++    + C P   +R+ DV+   Q H+
Sbjct: 512 WGILVYEPSACRPRHEIRSTDVIPGTQEHV 541


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,773
Number of Sequences: 438
Number of extensions: 3197
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)