Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0647
         (592 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core eudico...    40   0.033
UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=...    38   0.18 
UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to endonuclea...    36   0.94 
UniRef50_Q2HTD6 Cluster: RNA-binding region RNP-1 (RNA recogniti...    34   2.2  
UniRef50_UPI0000DA43AD Cluster: PREDICTED: hypothetical protein;...    33   6.6  
UniRef50_A7HZG4 Cluster: Transporter, auxin efflux carrier (AEC)...    33   6.6  
UniRef50_P05084 Cluster: Protein hunchback; n=64; Schizophora|Re...    33   6.6  
UniRef50_UPI00006CA6F8 Cluster: hypothetical protein TTHERM_0068...    32   8.7  
UniRef50_Q4SH20 Cluster: Chromosome 8 SCAF14587, whole genome sh...    32   8.7  
UniRef50_O93432 Cluster: Zinc finger protein; n=6; Clupeocephala...    32   8.7  

>UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core
           eudicotyledons|Rep: Polyprotein, putative - Solanum
           demissum (Wild potato)
          Length = 868

 Score = 40.3 bits (90), Expect = 0.033
 Identities = 17/28 (60%), Positives = 20/28 (71%)
 Frame = +3

Query: 378 KVADERRLHAAEMPMLRWMCGVTRMDRI 461
           K A   ++H AEM MLRWMCG TR D+I
Sbjct: 572 KNAHVHKMHVAEMRMLRWMCGHTRSDKI 599



 Score = 33.5 bits (73), Expect = 3.8
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 457 EYVRGSLKVTPVTEQLRSARLGWYGRVMRRN 549
           E +R  + V  V ++LR ARL W+G V RR+
Sbjct: 602 EVIREKVGVASVVDKLREARLRWFGHVKRRS 632


>UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=6;
           Papilionoideae|Rep: Reverse transcriptase family member
           - Glycine max (Soybean)
          Length = 377

 Score = 37.9 bits (84), Expect = 0.18
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +3

Query: 378 KVADERRLHAAEMPMLRWMCGVTRMDRI 461
           K   E ++  AEM MLRWMCG TR D+I
Sbjct: 256 KSQHENKVGVAEMRMLRWMCGKTRQDKI 283


>UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to
           endonuclease-reverse transcriptase; n=2;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           endonuclease-reverse transcriptase - Strongylocentrotus
           purpuratus
          Length = 958

 Score = 35.5 bits (78), Expect = 0.94
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +3

Query: 324 RCDAYKVFRMKNVL----NIVTKVADERRLHAAEMPMLRWMCGVTRMDRI 461
           + D YKV  +  +L        K  DE RLH  EM  LR + GVTR DR+
Sbjct: 787 KVDLYKVLVLSILLYGAETWTLKKVDENRLHTFEMACLRRIMGVTRFDRL 836


>UniRef50_Q2HTD6 Cluster: RNA-binding region RNP-1 (RNA recognition
           motif); Calcium-binding EF- hand; n=1; Medicago
           truncatula|Rep: RNA-binding region RNP-1 (RNA
           recognition motif); Calcium-binding EF- hand - Medicago
           truncatula (Barrel medic)
          Length = 559

 Score = 34.3 bits (75), Expect = 2.2
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = +3

Query: 378 KVADERRLHAAEMPMLRWMCGVTRMDRI 461
           K   E ++  AEM MLRWM G TR DRI
Sbjct: 298 KSQHENQVSVAEMRMLRWMSGKTRHDRI 325


>UniRef50_UPI0000DA43AD Cluster: PREDICTED: hypothetical protein;
           n=1; Rattus norvegicus|Rep: PREDICTED: hypothetical
           protein - Rattus norvegicus
          Length = 202

 Score = 32.7 bits (71), Expect = 6.6
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +3

Query: 216 KISICRIRFYRYTEISNRAINKLYCCDRLKSHRP*NRCDAYKVFRMKNVLNIVTKVADER 395
           +I +CR++ YR T++ N  + K  C +         RC   ++ RM+   N   + AD +
Sbjct: 86  EIQMCRMQMYRNTDVQNADVQKYRCAE--------CRCTEIQMCRMQMCRNTDVQNADAQ 137

Query: 396 RLHAAE 413
           +  +AE
Sbjct: 138 KYRSAE 143


>UniRef50_A7HZG4 Cluster: Transporter, auxin efflux carrier (AEC)
           family; n=1; Campylobacter hominis ATCC BAA-381|Rep:
           Transporter, auxin efflux carrier (AEC) family -
           Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 /
           NCTC 13146 /CH001A)
          Length = 306

 Score = 32.7 bits (71), Expect = 6.6
 Identities = 25/62 (40%), Positives = 30/62 (48%)
 Frame = -3

Query: 371 NIKYILHSKYFICIATILRPMRF*TVTTIEFVDCPIRYFGVSIKPNATYRYFLSIHMNAI 192
           NIK I++   FI +   L    F      EFV  PIR FG S  P A +   LS+  NAI
Sbjct: 156 NIKTIIYFPPFIGLVLGLALKGF---EIPEFVFAPIRMFGGSATPVALFAIGLSLGFNAI 212

Query: 191 SS 186
            S
Sbjct: 213 KS 214


>UniRef50_P05084 Cluster: Protein hunchback; n=64; Schizophora|Rep:
           Protein hunchback - Drosophila melanogaster (Fruit fly)
          Length = 758

 Score = 32.7 bits (71), Expect = 6.6
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -3

Query: 524 HPKRALLSCSVTGVTFRLPLTYSIHSRYSTHPSQHWHLRCMQSPFIRHFSHNIKY 360
           H K     C   GV     + +  H+R  TH      L+C + PF+  F H+++Y
Sbjct: 234 HGKMKNYKCKTCGVVAITKVDFWAHTR--THMKPDKILQCPKCPFVTEFKHHLEY 286


>UniRef50_UPI00006CA6F8 Cluster: hypothetical protein
           TTHERM_00683380; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00683380 - Tetrahymena
           thermophila SB210
          Length = 174

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 461 YSIHSRYSTHPSQHWHLR 408
           Y +H +YSTHP Q WH R
Sbjct: 157 YLVHLKYSTHPPQFWHDR 174


>UniRef50_Q4SH20 Cluster: Chromosome 8 SCAF14587, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 8 SCAF14587, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 1409

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -3

Query: 521 PKRALLSCSVTGVTFRLPLTYSIHSRYSTHPSQHWHLRCMQSPFIRHFSHNIKYILH 351
           PK++ L C   G+TF    T+++H  +  H  +   L C +      F H    + H
Sbjct: 398 PKKSCLLCKDCGMTFNRRETFNLHRHFHAHQDELTPLTCRECGLT--FQHRSSLVKH 452


>UniRef50_O93432 Cluster: Zinc finger protein; n=6;
           Clupeocephala|Rep: Zinc finger protein - Danio rerio
           (Zebrafish) (Brachydanio rerio)
          Length = 308

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 417 PMLRWMCGVTRMDRIC*RKSESDTCDRAAEKCAF 518
           PM  W+C       +C R +E+ TC + AE+C F
Sbjct: 39  PMTPWLCSTRYKTELCSRYAETGTC-KYAERCQF 71


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 575,717,392
Number of Sequences: 1657284
Number of extensions: 11259517
Number of successful extensions: 27478
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 26345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27456
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41073165837
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)