Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0647
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    28   0.89 
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    28   1.2  
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    25   6.2  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   8.3  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   8.3  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.3  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   8.3  

>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +1

Query: 487 PVTEQLRSARLGWYGRVMRRNENEVGKSE 573
           P+T  L+S  LG +G+ +++NE  + K++
Sbjct: 306 PLTRALKSGNLGEFGKCLQKNETLLAKTK 334


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 243  YRYTEISNRAINKLYCCDRLKSHRP*NRCDAYKVFRMKNVLNIVTKVADERRLH 404
            Y   E+ +R I+  Y C  ++     NR   +  F +K V   +T++  ++R+H
Sbjct: 886  YHAEELYSRCID--YACHNIEFFLEANRISEWDGFHLKKVAQRLTELLSDQRVH 937


>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 453 PFSLLHTSIATLASPLHAIAFH 388
           PF L H S A+  SPL  + +H
Sbjct: 173 PFELSHASTASAKSPLFGMNYH 194


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -2

Query: 546 SSHHTSIPSQTRTSQLLCHRCHFQTSSNIFYPFSLLHTSIATLASPLH 403
           S+H   I   T  + +L +  +    SN+    SL++ S+ +L S +H
Sbjct: 493 SNHSNIIKPNTYKNTILSNENNTPNYSNVCLSTSLINRSLPSLKSTMH 540


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 518 KRALLSCSVTGVTFRLPLTYSIHSRYSTHPSQHWHLRCMQSPFIRHFSHNIKY 360
           +RA  +CS  G  + + LTY   S  ST        RC+ S  + +F   I +
Sbjct: 331 ERATRNCSWIGRIWSIKLTYMTLSGASTSAVCEEKDRCLNSNLLVNFDEVIDF 383


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -3

Query: 431 PSQH---WHLRCMQSPFIRHFSHNIKYILHSKYFICI 330
           P QH   W   C Q+  I  FS   +++L  +  IC+
Sbjct: 85  PKQHDSIWCTACQQTKGINEFSKAQRHVLDPRCQICV 121


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 480 FQTSSNIFYPFSLLHTSIATLASPLHAIAFH 388
           F+ SS  FY  SLL +   +L   +H   +H
Sbjct: 382 FRMSSATFYNISLLTSDFWSLVIGIHVFGYH 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,961
Number of Sequences: 5004
Number of extensions: 51643
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)