Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0647
         (592 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492           31   0.52 
01_06_0279 + 28119902-28120058,28120602-28120960,28121314-281213...    29   2.8  
11_05_0026 - 18462749-18462841,18463642-18463726,18463989-184640...    28   4.8  
03_06_0035 - 31201115-31203646                                         28   4.8  

>08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492
          Length = 1141

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 409  RRCQCCDGCVE*REWIEYVRGSLKVTPVTEQLR 507
            RRC+     +  R+WI+ +RG+L + P+ E L+
Sbjct: 1017 RRCRTVAEALTGRQWIKDIRGALGIQPILEYLK 1049


>01_06_0279 +
           28119902-28120058,28120602-28120960,28121314-28121393,
           28121476-28121527,28121621-28121662,28121750-28121828,
           28121991-28122022,28122102-28122170,28122412-28122528,
           28122617-28122667,28123175-28123318
          Length = 393

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 563 PTSFSFRLITRPYHPKRALLSCSVTGVT 480
           P+S    L  +PYHPK A  S +VT  T
Sbjct: 21  PSSAPLLLRAKPYHPKAAACSFTVTATT 48


>11_05_0026 -
           18462749-18462841,18463642-18463726,18463989-18464021,
           18464278-18464411
          Length = 114

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = -3

Query: 545 RLITRP-YHPKRALLSCSVTGVTFRLPLTYSIHSRYSTHPSQHWHLRCMQSPFIRHFSHN 369
           RL+ RP +   RA     +   T+ +  T S  S Y+  PS+   + C+         H 
Sbjct: 35  RLLQRPSFRRSRAEFDIHILKRTYFIVYTLSESSVYTQEPSRQ--IMCLM--------HQ 84

Query: 368 IKYILHSKYFICIATILRPMRF 303
           I ++LH  Y + +  +  P+ F
Sbjct: 85  ITFLLHGFYLLRVKQLGEPLEF 106


>03_06_0035 - 31201115-31203646
          Length = 843

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
 Frame = -1

Query: 586 SIVNTHSY---QPHFHFVSSHVHTIPNAHF--SAALSQVSLSDF-L*HILSILVTP 437
           S ++T+S+   QP  H++  H   IP+ H+  + A   VS  D  L H  S + TP
Sbjct: 103 SDISTYSFFISQPGHHWIRLHFLPIPDDHYNLTTATFSVSTDDMVLLHDFSFIATP 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,147,115
Number of Sequences: 37544
Number of extensions: 299068
Number of successful extensions: 668
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)