Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0647
(592 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4) 29 2.1
SB_11520| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_50573| Best HMM Match : WH1 (HMM E-Value=0.0015) 29 3.8
SB_48077| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_21528| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058) 28 5.0
SB_1380| Best HMM Match : RVT_1 (HMM E-Value=1.4e-38) 28 6.6
SB_19895| Best HMM Match : PHD (HMM E-Value=3.8e-08) 28 6.6
SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_270| Best HMM Match : PHD (HMM E-Value=0.0037) 27 8.7
SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)
Length = 435
Score = 29.5 bits (63), Expect = 2.1
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = -3
Query: 383 HFSHNIKYILHSKYFICIATILRPMRF*TVTTIEFVDCPIRYFGVSIKPNATYRYFL--- 213
HFSH + Y++H Y I TI F + T PI Y + P TY L
Sbjct: 246 HFSHLVTYLIH-LYPISYRTI----HFSPLFTYRINLYPISYRTIHFSPLFTYLIHLYPI 300
Query: 212 ---SIHMNAISSFIVSLY 168
+IH + + +++++LY
Sbjct: 301 SYRTIHFSPLLTYLINLY 318
>SB_11520| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 222 SICRIRFYRYTEISNRAINKLYCCDRLKSHR 314
++ + R++ ISNRA+N++Y D L + R
Sbjct: 58 TLAETNYSRFSRISNRALNRMYSSDTLGTAR 88
>SB_50573| Best HMM Match : WH1 (HMM E-Value=0.0015)
Length = 554
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 560 TSFSFRLITRPYHPKRALLSCSVTGVTFRLPLTYSI--HSRYSTHP 429
T S R PY PKRALLSC+V R L Y +RY+ P
Sbjct: 470 TGPSARCSRVPYGPKRALLSCTVRAQA-RAALVYRTGPSARYTRVP 514
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -3
Query: 560 TSFSFRLITRPYHPKRALLSCSV 492
T S R PY PKRALLSC+V
Sbjct: 380 TGPSARCSRVPYGPKRALLSCTV 402
>SB_48077| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 496
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 363 LNIVTKVADERRLHAAEMPMLRWMCGVTRMD 455
L + K +D RL +E +LRWMC + D
Sbjct: 440 LRTIGKSSDLARLQRSERAILRWMCALKPKD 470
>SB_21528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 197 HSCESIENIDMSHSVLSIHRNI*SGNQQTLL 289
H CE +ENID H + I +++ N+ +LL
Sbjct: 167 HMCEDLENIDGLHHLYDIFKSLFFMNKPSLL 197
>SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058)
Length = 339
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = -2
Query: 540 HHTSIPSQTRTSQLLCHRCHFQTSSNIFY---PFSLLHTSIATLASPLHAIAFHPPL 379
HH S S R H H TSS++ + +LH S + PL+ + PPL
Sbjct: 203 HHLSTSSHVRHLSTSSHVRHLSTSSHVRHLSTSSHVLHLSTQSCPPPLNLQSCPPPL 259
>SB_1380| Best HMM Match : RVT_1 (HMM E-Value=1.4e-38)
Length = 622
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 378 KVADERRLHAAEMPMLRWMCGVTRMD 455
K +D RL +E MLRWMC + D
Sbjct: 529 KSSDLARLQRSERAMLRWMCALKPED 554
>SB_19895| Best HMM Match : PHD (HMM E-Value=3.8e-08)
Length = 335
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 378 KVADERRLHAAEMPMLRWMCGVTRMD 455
K +D RL +E MLRWMC + D
Sbjct: 268 KSSDLTRLQRSERAMLRWMCALKPED 293
>SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -3
Query: 521 PKRALLSCSVTGVTFRLPLTYSIHSR-YSTHPSQHWHLRCMQSPFIRHFSHNIKYI-LHS 348
P + L C+V G F T H R +S +P++H C ++ H+ ++ +HS
Sbjct: 25 PGQKLFQCTVCGKVFNRKYTMQRHMRSHSDNPARHKCTEC-DKTYMHHYHLKRHFLSVHS 83
Query: 347 K 345
+
Sbjct: 84 R 84
>SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -1
Query: 580 VNTHSYQPHFHFVSSHVHTIPNAHFSAALSQVSLSDFL*HILSILVTPH 434
V THS H H + S +HT+P H ++S S+S +L++L H
Sbjct: 308 VITHS--SHCHTLVSVLHTLPLCHTLVSVSLFSVSHTCLVLLALLGVTH 354
>SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 378 KVADERRLHAAEMPMLRWMCGV 443
K +D RL +E MLRWMC +
Sbjct: 924 KSSDLARLQRSECAMLRWMCAL 945
>SB_270| Best HMM Match : PHD (HMM E-Value=0.0037)
Length = 251
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 378 KVADERRLHAAEMPMLRWMCGV 443
K +D RL +E MLRWMC +
Sbjct: 226 KSSDLARLQRSECAMLRWMCAL 247
>SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 836
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -3
Query: 560 TSFSFRLITRPYHPKRALLSCSVTGVTFRLPLTYSIHSRYSTHPSQHWH 414
TS S R P+H A+++ + +T P + S+ R+ HP H H
Sbjct: 512 TSSSQRHHHHPHHHHSAIITIHII-ITAPSPPSISLSQRHHHHPHHHSH 559
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,324,878
Number of Sequences: 59808
Number of extensions: 378250
Number of successful extensions: 838
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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