Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0647
         (592 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79870.1 68414.m09330 oxidoreductase family protein contains ...    31   0.57 
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ...    29   2.3  
At2g31880.1 68415.m03895 leucine-rich repeat transmembrane prote...    29   3.1  
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su...    28   4.1  
At2g37110.1 68415.m04553 expressed protein contains Pfam profile...    28   4.1  
At2g24060.1 68415.m02874 translation initiation factor 3 (IF-3) ...    28   5.4  
At5g51150.1 68418.m06342 expressed protein similar to unknown pr...    27   9.4  
At4g13080.1 68417.m02039 xyloglucan:xyloglucosyl transferase, pu...    27   9.4  
At1g55850.1 68414.m06405 cellulose synthase family protein simil...    27   9.4  

>At1g79870.1 68414.m09330 oxidoreductase family protein contains
           Pfam profile: PF02826 D-isomer specific 2-hydroxyacid
           dehydrogenase, NAD binding domain; similar to glyoxylate
           reductase from Thermococcus litoralis [gi:13515409]
          Length = 313

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 284 EFVDCPIRYFGVSIKPNATYRYFLSI 207
           E   CPI Y+  +IKP+  Y+Y+ ++
Sbjct: 164 EAFSCPINYYSRTIKPDVAYKYYPTV 189


>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
           contains Pfam PF00096: Zinc finger, C2H2 type
          Length = 387

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = -3

Query: 500 CSVTGVTFRLPLTYSIHSRYSTHPSQHWHLRCMQSPFIRHFSHNIKYILH 351
           C+  G      L +++ S   TH  +++H+ C  S  ++ ++H  K   H
Sbjct: 140 CTYEGCGKAFSLDFNLRSHMKTHSQENYHI-CPYSGCVKRYAHEYKLKNH 188


>At2g31880.1 68415.m03895 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 641

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 303 KSHRP*NRCDAYKVFRMKNVLNIVTKVADERRLHAAEMPMLRWM 434
           ++H+  ++CD Y    +  +L I    +DE   H  EM +++WM
Sbjct: 539 QTHKFTDKCDIYSFGVILGILVIGKLPSDEFFQHTDEMSLIKWM 582


>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26s proteasome regulatory subunit s12
           (proteasome subunit p40) (mov34 protein) SP:P26516 from
           [Mus musculus]; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 308

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 10  IRHEATLHNQKLHLHLTTRIVQYRVEE*VCLHIL 111
           ++  AT  +QK+ +H++T I  + VEE    H+L
Sbjct: 151 VKENATQKSQKVFVHVSTEIAAHEVEEIGVEHLL 184


>At2g37110.1 68415.m04553 expressed protein contains Pfam profile
           PF04749: Protein of unknown function, DUF614
          Length = 242

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +1

Query: 379 KWRMKG--DCMQRRCQCCDGCVE 441
           K+ ++G  + M R C CC GC+E
Sbjct: 160 KFNLEGSFEAMNRSCGCCGGCIE 182


>At2g24060.1 68415.m02874 translation initiation factor 3 (IF-3)
           family protein similar to SP|P33319 Translation
           initiation factor IF-3 {Proteus vulgaris}; contains Pfam
           profiles PF00707: Translation initiation factor IF-3,
           C-terminal domain, PF05198: Translation initiation
           factor IF-3, N-terminal domain
          Length = 312

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 261 IFRCIDKTECDISIFSIDSHECDL*LYRIALLWNNI 154
           +F  I KT    S+FS+DS  C L L +  L + N+
Sbjct: 14  VFTGITKTVSSHSLFSVDSKLCSLRLSKTELSFTNL 49


>At5g51150.1 68418.m06342 expressed protein similar to unknown
           protein (gb|AAD46013.1)
          Length = 531

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 390 ERRLHAAEMPMLRWMCGVTRMDRIC*RKSESDTCDRAAEKC 512
           ERRL  AE  +   M  + R  R   R S ++ CD A   C
Sbjct: 30  ERRLREAEERLRDAMAELQRRQRSAARGSHAELCDHADVSC 70


>At4g13080.1 68417.m02039 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           endoxyloglucan transferase EXGT-A1 GI:5533309 from
           [Arabidopsis thaliana]
          Length = 292

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 249 YTEISNRAINKLYCCDRLKSHRP*NRC 329
           YT +  + +N  YC D+++ H P + C
Sbjct: 262 YTNVRQKYMNYDYCSDKVRFHVPPSEC 288


>At1g55850.1 68414.m06405 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit [gi:13925881]
           from Nicotiana alata, cellulose synthase-5 [gi:9622882]
           from Zea mays
          Length = 729

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 235 FGFIDTPKYLIGQSTNSIVVT 297
           FGF+DT K L+G S ++ V+T
Sbjct: 599 FGFMDTIKKLLGVSESAFVIT 619


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,558,879
Number of Sequences: 28952
Number of extensions: 251912
Number of successful extensions: 675
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)