Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0646
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s...    27   2.4  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    26   3.2  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    25   5.6  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    25   9.7  

>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
           subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +1

Query: 37  DALRN--ISIKIPKKKELSLFYVIKQKKVIMC*LVHSFRNTVT*NFVCSLSQSVLIKEAQ 210
           DA +N    +   ++ ELS F   +Q+KV +   +H F +T     + ++   +   E Q
Sbjct: 3   DATKNPIADLSESEQLELSKFIESEQQKVKLQQAIHQFTSTCWPKCIGNIGNKLDKSEEQ 62

Query: 211 CVRFC 225
           C++ C
Sbjct: 63  CLQNC 67


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
 Frame = -1

Query: 406 LQDSPFLSVNT-----LLLSVGLTMMSSRXXXXXXXXXXXXPKMFRSKAGSKVVSWARPT 242
           LQ  P LS NT     L+  + L   +SR                 +K  +++VS +   
Sbjct: 207 LQALPSLSKNTVNESSLVRKLNLEKSTSRELRIPTQTLEPKFTTNTAKYANELVSCSMLD 266

Query: 241 VTSTASKSERIALLLLKHSEKENIQNFTSLYYENYALISTLSLF 110
            +ST SKS    + L  H    ++QN +     +   +   SLF
Sbjct: 267 SSSTLSKSVNSKINLKSHQSSSSVQNSSRKLTSSQLTLRQSSLF 310


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 136 ALISTLSLFFV*LRKIRITPFFWVFLLKC 50
           A+ +T+ +FF    +  + P FW+  L C
Sbjct: 210 AMEATMGMFFTHQEQAFLQPVFWISCLSC 238


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 205 LLLLKHSEKENIQNFTSLYYENYALISTLSL 113
           L+++K   K+  + F  +YY +YA I  LSL
Sbjct: 172 LVIVKAIYKQMFRIFAHMYYAHYAEILHLSL 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,160,478
Number of Sequences: 5004
Number of extensions: 42184
Number of successful extensions: 235
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)