Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0646
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    25   0.51 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.2  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 244 TVTSTASKSERIALLLLKHSEKENIQNFTSLYYENYALISTL 119
           TVT+  +    I ++L+ H     I++  + Y  +Y  ISTL
Sbjct: 143 TVTTILAAIVGIVMVLIIHPGDPRIKSVVTAYKADYTKISTL 184


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 31  RLDALRNISIKIPKKKELSLFYVIKQKKVIMC*LVHSF 144
           RL   RNI +    K+ L     +K K+ I   LVH F
Sbjct: 332 RLLDRRNIEVVAKNKETLQAITGLKVKRRISFILVHGF 369


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 544 LVQQISTLSCQSSSPNLTSSTPH 476
           +V + S  S +S SP+L +S PH
Sbjct: 32  IVDRRSPSSSRSPSPSLLTSQPH 54


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 254 PGHDLRPCLASEHLRNAPHAGEARHGEPG 340
           P   L+P LAS H   +   G +    PG
Sbjct: 275 PNSSLQPSLASHHSHLSSALGRSACHSPG 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,458
Number of Sequences: 438
Number of extensions: 2785
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)