Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0646
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38140.1 68417.m05385 zinc finger (C3HC4-type RING finger) fa...    31   0.38 
At4g11440.1 68417.m01842 mitochondrial substrate carrier family ...    28   3.6  
At5g60160.1 68418.m07542 aspartyl aminopeptidase, putative simil...    27   6.2  
At1g70580.2 68414.m08128 glutamate:glyoxylate aminotransferase 2...    27   8.3  
At1g70580.1 68414.m08127 glutamate:glyoxylate aminotransferase 2...    27   8.3  

>At4g38140.1 68417.m05385 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 145

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +3

Query: 399 SCKCVPYYLCNKNNEGVDVNNASVTGWGVLDVRFGEEDWQESVEICC 539
           +C C+P     KN    D ++    G+ ++ V FG+++ +E  EICC
Sbjct: 20  TCVCIPLGRLKKNGGDADAHDDD--GYNLVGVMFGDKEKEE--EICC 62


>At4g11440.1 68417.m01842 mitochondrial substrate carrier family
           protein 
          Length = 550

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 333 NLEDIIVKPTESNSVFTDKNGESCKCV 413
           N E  I+ P  S      +NG+ C CV
Sbjct: 184 NFEGCILNPVSSKEELASRNGDGCDCV 210


>At5g60160.1 68418.m07542 aspartyl aminopeptidase, putative similar
           to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
           {Homo sapiens}; contains Pfam profile PF02127:
           Aminopeptidase I zinc metalloprotease (M18)
          Length = 477

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 545 ISAADLHALLPVFFAEPDIQHSPPRHAGVINVH 447
           +SA   HAL P F  + +  H P  H G++  H
Sbjct: 344 VSADMAHALHPNFMDKHEENHQPKMHGGLVIKH 376


>At1g70580.2 68414.m08128 glutamate:glyoxylate aminotransferase 2
           (GGT2) identical to glutamate:glyoxylate
           aminotransferase 2 [Arabidopsis thaliana] GI:24461829;
           similar to alanine aminotransferase from Panicum
           miliaceum [SP|P34106], GI:4730884 from Oryza sativa;
           contains Pfam profile PF00155: aminotransferase, classes
           I and II
          Length = 481

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 411 VPYYLCNKNNEGVDVNN 461
           VPYYL    N G+DVNN
Sbjct: 180 VPYYLEESENWGLDVNN 196


>At1g70580.1 68414.m08127 glutamate:glyoxylate aminotransferase 2
           (GGT2) identical to glutamate:glyoxylate
           aminotransferase 2 [Arabidopsis thaliana] GI:24461829;
           similar to alanine aminotransferase from Panicum
           miliaceum [SP|P34106], GI:4730884 from Oryza sativa;
           contains Pfam profile PF00155: aminotransferase, classes
           I and II
          Length = 481

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 411 VPYYLCNKNNEGVDVNN 461
           VPYYL    N G+DVNN
Sbjct: 180 VPYYLEESENWGLDVNN 196


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,337,743
Number of Sequences: 28952
Number of extensions: 225068
Number of successful extensions: 582
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)