Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0643
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57961| Best HMM Match : Ion_trans (HMM E-Value=2.5e-38)             31   0.64 
SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_4639| Best HMM Match : Saccharop_dh (HMM E-Value=3e-06)             31   1.1  
SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22)                   29   4.5  

>SB_57961| Best HMM Match : Ion_trans (HMM E-Value=2.5e-38)
          Length = 381

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = +2

Query: 68  FANFLQLVK--QQYFELRDGKIRFTWCXGATWIHXENQAVNFLRRINXRNQQYHXREVGV 241
           +ANF ++ +  QQ     D  I    C   TWI       + L     R+QQ H +   V
Sbjct: 268 YANFEEMTRSFQQTLRHDDYVIMADPCTNPTWIETFLATTDHLDLYTFRSQQLHFQIANV 327

Query: 242 LXGRSDKK 265
           L   +DKK
Sbjct: 328 LADMADKK 335


>SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = -3

Query: 84 CRKFAKYKNVCTFSVPRAEFLQPGDPLV 1
          C  F  +  + T  V R EFLQPGDPLV
Sbjct: 16 CGSFGDHSYLST-RVDRIEFLQPGDPLV 42


>SB_4639| Best HMM Match : Saccharop_dh (HMM E-Value=3e-06)
          Length = 268

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 540 HNAAEEGNVLIVPSCGLASIPSAAGLMFLQNQF 638
           H+ A++  V ++ +CG  SIP+  G+ F   QF
Sbjct: 121 HDLAKQKGVHVIGACGFDSIPADMGVAFATEQF 153


>SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22)
          Length = 649

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 5   SGSPGCRNSARGTLKVHTFLYFANFLQLVKQQYFELRDGKIRF 133
           +G    R+S RG+  + +     N  Q++   +FE+ DGKIR+
Sbjct: 498 AGWVNIRDSTRGSHSIFSTARAINVGQIIGGYHFEIDDGKIRW 540


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,029,423
Number of Sequences: 59808
Number of extensions: 272780
Number of successful extensions: 562
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)