Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0642
(620 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 4e-06
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08) 48 8e-06
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15) 28 7.0
SB_52653| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_49716| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0) 27 9.3
SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_15424| Best HMM Match : PAN (HMM E-Value=0.00016) 27 9.3
SB_46989| Best HMM Match : Pox_A32 (HMM E-Value=0.023) 27 9.3
>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/72 (31%), Positives = 35/72 (48%)
Frame = -1
Query: 557 QVIQWVQNPRTVTEAKNFEPWREKCSVEGNPACWVPHSCKLTSKEVPGETINLQTCLRCP 378
QVI+W++NP+ V A F W C P C P+ C T+ + + TC CP
Sbjct: 465 QVIEWMKNPQDVNGANGFPAW--DCLTRPKPRCTTPNVCHYTTP----QDFYMPTCSDCP 518
Query: 377 VNYPWLNDPTGD 342
++P +P G+
Sbjct: 519 KHFPSPTNPDGE 530
>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
Length = 893
Score = 47.6 bits (108), Expect = 8e-06
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = -1
Query: 590 SHNDVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSVEGNPACW 456
S DVYFVT++Q I+W++ P + + K F PW +C PA W
Sbjct: 818 SQGDVYFVTVSQAIEWIKTPTPLEKIKTFAPW--QCDKPAPPAPW 860
>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4475
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -1
Query: 563 MTQVIQWVQNPRTVTEAKNFEPWREKCSVEGNPACWVPHSCKLTSKEVPG 414
+ QVI + ++P ++ P+ +V G P C +C TSK V G
Sbjct: 3934 LVQVIIFGRDPCYASDCAEKRPYSTCQAVNGQPTCVCNKNCPSTSKPVCG 3983
>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
Length = 1724
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 463 AGFPSTEHFSLHGSKFLASVTVRGFCTHWITCVM 564
AG P+T HF LHG+ +++ G T +T +M
Sbjct: 1132 AGPPNTSHFGLHGASTISTTLTPGQST-TLTIIM 1164
>SB_52653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 369
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
Frame = -1
Query: 563 MTQVIQWV-QNPR---TVTEAKNFEPWREK 486
+ ++ QW+ QNPR ++ +N+EPW E+
Sbjct: 151 LKEIDQWLNQNPREIVVISFTRNYEPWNER 180
>SB_49716| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 496 HGSKFLASVTVRGFCTHWITCVMVT 570
H ++ L +TV CT WI C VT
Sbjct: 320 HPTRSLTLITVEHGCTTWINCDQVT 344
>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2639
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 218 SSDKIALVTLPTIMYFEQLLHQININ**STWGSRSWLLNSGHRPWGRLTXGS 373
+S++ AL + I YF LH + + +L+N H P GRL S
Sbjct: 1003 ASEREALALVTGIRYFSCYLHNKRFEVYTDHAALKYLMNIKHDPTGRLARWS 1054
>SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1418
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/43 (23%), Positives = 19/43 (44%)
Frame = -1
Query: 461 CWVPHSCKLTSKEVPGETINLQTCLRCPVNYPWLNDPTGDGHY 333
C+VP C + ++ + G T ++ C + +LN Y
Sbjct: 1310 CYVPFFCAMVTRVIVGYTTPVKIAYECGATFVYLNSTLNPALY 1352
>SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Frame = -1
Query: 563 MTQVIQWVQNPRTVTEAKNFEPWREK----CSVEGNPACWVPHSC 441
+ +I VQ AK W + CS G+ AC VP+SC
Sbjct: 125 LQNLIDGVQQEFKCCGAKGINDWDKNIYFNCSSPGSEACGVPYSC 169
>SB_15424| Best HMM Match : PAN (HMM E-Value=0.00016)
Length = 702
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Frame = -3
Query: 447 FLQAHFKGSSRRNHQFTNLFEMPSQLPXVK----RPHGRWPLLRSHDLEPH 307
F +AHF+ + + F P Q P + PH + P R+ EPH
Sbjct: 329 FSEAHFQSPTSNSLFQRPTFRAPHQTPFFRAPLSEPHSQSPTFRAPQSEPH 379
>SB_46989| Best HMM Match : Pox_A32 (HMM E-Value=0.023)
Length = 719
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 462 CRVSFDGALFSPRLEVLGFSHGTWVLYPLDH 554
C + D A + + L +HG W PLDH
Sbjct: 319 CSKAGDKATSNAKENALNAAHGAWYTIPLDH 349
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,930,853
Number of Sequences: 59808
Number of extensions: 369503
Number of successful extensions: 957
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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