Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0642
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    58   7e-09
U28735-11|AAM69114.1|  358|Caenorhabditis elegans Hypothetical p...    47   1e-05
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    47   1e-05
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr...    47   1e-05
AC006709-1|AAF60432.2|  256|Caenorhabditis elegans Hypothetical ...    32   0.29 
AF101309-4|AAV58863.1|  669|Caenorhabditis elegans Hypothetical ...    30   1.5  
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ...    30   1.5  
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protei...    28   6.2  
U67954-8|AAB52608.2|  782|Caenorhabditis elegans Sulfate permeas...    27   8.2  
AY954524-1|AAX34432.2|  762|Caenorhabditis elegans anion transpo...    27   8.2  
AY887909-1|AAX34421.1|  782|Caenorhabditis elegans anion transpo...    27   8.2  

>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
            x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
 Frame = -1

Query: 596  LQSHNDVYFVTMTQVIQWVQNPRTVTEAKNFEPWREK--C----SVEGNPA---CWVPHS 444
            + +  DVY VT+ Q+I W++ P  ++E K+     +   C    S   NP+   C +P+ 
Sbjct: 1781 MSAQKDVYIVTIKQLIDWMKRPVPISEMKSVRGKSKAVGCPITLSFNRNPSLSTCDIPNK 1840

Query: 443  CKLTSKEVPGETINLQTCLRCPVNYPWLNDPTG 345
            C  ++  +  +     TCL CP  YPWL +P G
Sbjct: 1841 CLYSTPSLSSQEHQFLTCLPCPTMYPWLENPAG 1873


>U28735-11|AAM69114.1|  358|Caenorhabditis elegans Hypothetical
           protein F48E3.8c protein.
          Length = 358

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
 Frame = -1

Query: 581 DVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSV--EGNPACWVPHSCKLTSKEVPGET 408
           DV+ VT +Q+I +++NP  +   K+   W+ K  +  E NP C  P +C  + +      
Sbjct: 284 DVFVVTGSQIIDYMRNPVDLNNIKSLRSWQCKPQMKDEANP-CENPTTCSFSGRARGQFA 342

Query: 407 INLQTCLRCPVNYPWL 360
            + + C  CP +YPW+
Sbjct: 343 HSFRMCGVCPKSYPWI 358


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
 Frame = -1

Query: 581  DVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSV--EGNPACWVPHSCKLTSKEVPGET 408
            DV+ VT +Q+I +++NP  +   K+   W+ K  +  E NP C  P +C  + +      
Sbjct: 2353 DVFVVTGSQIIDYMRNPVDLNNIKSLRSWQCKPQMKDEANP-CENPTTCSFSGRARGQFA 2411

Query: 407  INLQTCLRCPVNYPWL 360
             + + C  CP +YPW+
Sbjct: 2412 HSFRMCGVCPKSYPWI 2427


>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical protein
            F48E3.8b protein.
          Length = 1299

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
 Frame = -1

Query: 581  DVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSV--EGNPACWVPHSCKLTSKEVPGET 408
            DV+ VT +Q+I +++NP  +   K+   W+ K  +  E NP C  P +C  + +      
Sbjct: 1225 DVFVVTGSQIIDYMRNPVDLNNIKSLRSWQCKPQMKDEANP-CENPTTCSFSGRARGQFA 1283

Query: 407  INLQTCLRCPVNYPWL 360
             + + C  CP +YPW+
Sbjct: 1284 HSFRMCGVCPKSYPWI 1299


>AC006709-1|AAF60432.2|  256|Caenorhabditis elegans Hypothetical
           protein Y119C1A.1 protein.
          Length = 256

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -1

Query: 533 PRTVTEAKNFEPWR-EKCSVEGNPACWVPHSCKLTSKEVPGETINLQTCLRC 381
           PR++++  +  PW  ++CS E N   +  H C+L S+      I+   C  C
Sbjct: 198 PRSISQENSTGPWICDRCSRENNSNSYRCHHCQLPSRRFDPSEIDFCGCEYC 249


>AF101309-4|AAV58863.1|  669|Caenorhabditis elegans Hypothetical
           protein H24G06.1d protein.
          Length = 669

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = -2

Query: 535 THVP*LKPRTSSRGEKSAPSKETLHAGYLIPASSLQRKFPEKPSI 401
           TH P L PRT+SR   +APS++ L    +  +S  +RK  ++ S+
Sbjct: 104 THPPPLAPRTTSRVLSTAPSQQALQ--QIQASSPFRRKSMDRNSL 146


>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
            protein H24G06.1b protein.
          Length = 1601

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = -2

Query: 535  THVP*LKPRTSSRGEKSAPSKETLHAGYLIPASSLQRKFPEKPSI 401
            TH P L PRT+SR   +APS++ L    +  +S  +RK  ++ S+
Sbjct: 1036 THPPPLAPRTTSRVLSTAPSQQALQ--QIQASSPFRRKSMDRNSL 1078


>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
            protein H24G06.1a protein.
          Length = 1680

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = -2

Query: 535  THVP*LKPRTSSRGEKSAPSKETLHAGYLIPASSLQRKFPEKPSI 401
            TH P L PRT+SR   +APS++ L    +  +S  +RK  ++ S+
Sbjct: 1036 THPPPLAPRTTSRVLSTAPSQQALQ--QIQASSPFRRKSMDRNSL 1078


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 452 PHSCKLTSKEVPGETINLQTCLRCPVNYPWLNDP 351
           P +C+ T  EV   T+  Q   + P +YP L DP
Sbjct: 295 PTNCRNTCNEVCAPTVASQPSTQAPQSYPVLLDP 328


>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
            F54E4.1 protein.
          Length = 2948

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 511  RTSSRGEKSAPSKETLHAGYLIPASSLQRKFPEKPSI 401
            + S+  + S PS E LH+ ++ P  ++ + F EKPS+
Sbjct: 2391 KLSTASKDSLPS-EALHSKWVPPQKNIVQLFAEKPSV 2426


>AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protein 4
           protein.
          Length = 741

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 530 RTVTEAKNFEPWREKCS 480
           +  T  KNFE W+EKCS
Sbjct: 26  KQATFQKNFESWKEKCS 42


>U67954-8|AAB52608.2|  782|Caenorhabditis elegans Sulfate permease
           family protein 3 protein.
          Length = 782

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 608 IDEILQSHNDVYFVTMTQVIQWVQNPRTVTEAKNFEPWRE 489
           +DE+L   N+   ++ T ++Q + N  +  E    E W E
Sbjct: 149 LDELLDKENETALISNTTLMQILGNETSFVEEVTMEMWTE 188


>AY954524-1|AAX34432.2|  762|Caenorhabditis elegans anion
           transporter SULP-3b protein.
          Length = 762

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 608 IDEILQSHNDVYFVTMTQVIQWVQNPRTVTEAKNFEPWRE 489
           +DE+L   N+   ++ T ++Q + N  +  E    E W E
Sbjct: 149 LDELLDKENETALISNTTLMQILGNETSFVEEVTMEMWTE 188


>AY887909-1|AAX34421.1|  782|Caenorhabditis elegans anion
           transporter SULP-3a protein.
          Length = 782

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 608 IDEILQSHNDVYFVTMTQVIQWVQNPRTVTEAKNFEPWRE 489
           +DE+L   N+   ++ T ++Q + N  +  E    E W E
Sbjct: 149 LDELLDKENETALISNTTLMQILGNETSFVEEVTMEMWTE 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,189,312
Number of Sequences: 27780
Number of extensions: 271413
Number of successful extensions: 712
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)