Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0642
         (620 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16090.1 68415.m01845 zinc finger protein-related contains si...    32   0.35 
At3g27710.1 68416.m03460 zinc finger protein-related contains si...    30   1.1  
At5g27650.1 68418.m03313 PWWP domain-containing protein hypothet...    30   1.4  
At2g03280.1 68415.m00282 expressed protein contains Pfam PF03138...    30   1.4  
At1g14020.1 68414.m01656 expressed protein contains Pfam PF03138...    29   1.9  
At1g65570.1 68414.m07438 polygalacturonase, putative / pectinase...    29   2.5  
At1g20780.1 68414.m02602 armadillo/beta-catenin repeat protein-r...    28   4.3  
At5g28646.1 68418.m03507 wave-dampened2 (WVD2) nearly identical ...    28   5.7  
At5g15740.1 68418.m01841 expressed protein contains Pfam PF03138...    28   5.7  

>At2g16090.1 68415.m01845 zinc finger protein-related contains
           similarity to zinc finger proteins and Pfam domain,
           PF01485: IBR domain
          Length = 593

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
 Frame = -1

Query: 506 FEPWREKCSVEGNPACWVP-HS--CKLTSKEV-PGETINLQTCLRCPVNYPWL-NDPTGD 342
           +E WR+KC  E     W+  H+  C    K V      NL TCL C  ++ WL  + TG 
Sbjct: 260 WELWRKKCFDESETVNWITVHTKPCPKCHKPVEKNGGCNLVTCL-CRQSFCWLCGEATGR 318

Query: 341 GHY*GAMISSPTC 303
            H   A IS  +C
Sbjct: 319 DHT-WARISGHSC 330


>At3g27710.1 68416.m03460 zinc finger protein-related contains
           similarity to zinc finger proteins and Pfam domain,
           PF01485: IBR domain
          Length = 537

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = -1

Query: 497 WREKCSVEGNPACWVPHSCKL---TSKEV-PGETINLQTCLRCPVNYPWL-NDPTGDGH 336
           W++KC  E     W+  + KL    SK +   +  NL TC +C  ++ WL    TG  H
Sbjct: 260 WKKKCEDESETVNWITVNTKLCPKCSKPIQKRDGCNLMTC-KCGQHFCWLCGQATGRDH 317


>At5g27650.1 68418.m03313 PWWP domain-containing protein hypothetical
            protein F22F7.12 - Arabidopsis thaliana, EMBL:AC009606
          Length = 1072

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 458  WVPHSCKLTSKEVPGETINLQTCLRCPVNYPWLNDPTGDGH 336
            W+  +  L    +P   +NL++CL+ PV+ P  +   G+G+
Sbjct: 890  WLDQAPPLHQPTLPPPNVNLKSCLKKPVDDPSSSSNNGNGN 930


>At2g03280.1 68415.m00282 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as ' axi
           1 protein from Nicotiana tabacum -related' based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 481

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 462 CRVSFDGALFSPRLEVLG 515
           CRV+F G  F+PR+E LG
Sbjct: 224 CRVNFQGLRFTPRIEALG 241


>At1g14020.1 68414.m01656 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 499

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 447 MRYPACRVSFDGALFSPRLEVLG 515
           +++  CRV+F G  F+P+LE LG
Sbjct: 222 LQWLRCRVNFQGLKFTPQLEALG 244


>At1g65570.1 68414.m07438 polygalacturonase, putative / pectinase,
           putative similar to polygalacturonase 5 [Lycopersicon
           esculentum] GI:2459817; contains Pfam profile PF00295:
           Glycosyl hydrolases family 28 (polygalacturonases)
          Length = 397

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = -1

Query: 599 ILQSHNDVYFV-TMTQVIQWVQNPRTVTE-AKNF-EPWREKCSVEGNPACWVPHSCKLTS 429
           I+ SH   +   T   V+ +  NP  + E AK F + W   C VE +   +VP    L S
Sbjct: 17  IIMSHFGQFDARTSLNVLSFGANPNGIVESAKAFSDAWDAACGVEDSVVIYVPKGRYLVS 76

Query: 428 KEV 420
            EV
Sbjct: 77  GEV 79


>At1g20780.1 68414.m02602 armadillo/beta-catenin repeat
           protein-related / U-box domain-containing protein low
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 801

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -1

Query: 542 VQNPRTVTEAKNFEPWREKCSVEGNPACWVPHSCKLTSKEVPGETINLQTCLR 384
           ++N RT  E +  E W ++C   G P      SC LTS+E+    ++    LR
Sbjct: 42  LENGRTF-EREAIEKWFKECRDSGRPP-----SCPLTSQELTSTDVSASIALR 88


>At5g28646.1 68418.m03507 wave-dampened2 (WVD2) nearly identical to
           WAVE-DAMPENED2 [Arabidopsis thaliana] GI:28453880
          Length = 293

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 593 QSHNDVYFVTMTQVIQWVQN-PRTVTEAKNFEPWREKCSVE 474
           Q+   V +V   ++   + N PR   EAK+F  WR+ C  E
Sbjct: 171 QNRQSVAYVDRERLQHSINNEPRFSKEAKDFFQWRKSCEEE 211


>At5g15740.1 68418.m01841 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 508

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 462 CRVSFDGALFSPRLEVLG 515
           CRV+F+G  F+P++E LG
Sbjct: 243 CRVNFNGLKFTPQIEELG 260


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,428,744
Number of Sequences: 28952
Number of extensions: 253312
Number of successful extensions: 589
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)