Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0641
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   1.2  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   6.6  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    25   8.8  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   8.8  

>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = +1

Query: 220 KKKMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSF 372
           + +    T    L W  +   PT      PF   P+TS  L  +    SSF
Sbjct: 244 RARQTTRTRSNTLPWSPRVFGPTLGYNTPPFGYPPTTSSALPNASGSSSSF 294


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 7/31 (22%), Positives = 19/31 (61%)
 Frame = +3

Query: 291  EKKMFTICSKSKHKSWVKNIRIETIFIWRIR 383
            +KK+ T+  + K + W+ + R   I+++ ++
Sbjct: 1546 QKKLVTLAEQDKKRVWICSFRTNEIYLYGLK 1576


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +1

Query: 265 ESKAQL--PTKRRRCSPFAASPSTSP 336
           E K++L  PT  R  +PF  SPS++P
Sbjct: 47  EGKSELVSPTLERLVAPFNCSPSSTP 72


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1261

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 349  SESKPSSFGESVSAPVKITPERMAQEIYDEIKR 447
            S  +PS++   V A + +   R A EI +++KR
Sbjct: 1177 SGKEPSTYENMVRAYLSVNDGRKAMEIVEQLKR 1209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,724
Number of Sequences: 5004
Number of extensions: 54334
Number of successful extensions: 162
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)