Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0641
(618 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 9e-07
SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15) 31 0.75
SB_16138| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_25483| Best HMM Match : zf-B_box (HMM E-Value=0.21) 29 4.0
SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_47465| Best HMM Match : EGF_CA (HMM E-Value=2.4e-08) 27 9.2
SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1125
Score = 50.8 bits (116), Expect = 9e-07
Identities = 47/138 (34%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Frame = +1
Query: 217 RKKKMACATLKRNLDWE---SKAQLPT-KRRRCSPFAASPSTSPGLKTSESKPSSFGESV 384
R KMACATLKR+ +++ S P+ KRRRC P A S S S +S + S F E
Sbjct: 151 RFSKMACATLKRSYEFDPLLSPQHQPSPKRRRCIPMATSSSPS----SSSNTDSPFLEIT 206
Query: 385 SAPVKITPERMAQEIYDEIKRLHRRGQLRLANXXXXXXXXXXXXXXXXXPPHQSAHGPQR 564
+ + E+++ ++ E KRL RR L+ + P S P R
Sbjct: 207 P---RYSQEQLSTNLHMEWKRLQRRKHLKAPS-----SNSVESMNTYTCSPSSS---PTR 255
Query: 565 ARTRALFTFKQVRMICER 618
+ + LFT KQV ++CER
Sbjct: 256 -KEQPLFTLKQVSLLCER 272
>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
Length = 1600
Score = 31.1 bits (67), Expect = 0.75
Identities = 21/88 (23%), Positives = 37/88 (42%)
Frame = +1
Query: 175 QIR*HIRKPEDFVGRKKKMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSE 354
Q R KP+D RK K++C T K K + + + A+S + ++S+
Sbjct: 979 QARPRPSKPQDQASRKTKVSCMTKKDQYQASRKTKQVARPSKPQDQASSKTQD---QSSD 1035
Query: 355 SKPSSFGESVSAPVKITPERMAQEIYDE 438
+ + + P+KI P + Q E
Sbjct: 1036 GREGGYSRYLMLPLKIIPAVIIQRALPE 1063
>SB_16138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 105 YNSFSSYSNVRCFKFKKIILHLRLPGCSNPR 13
Y S Y+ R +K+ + R+PGC PR
Sbjct: 28 YRVLSGYTPPRRYKYGLVAAEARIPGCRGPR 58
>SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1511
Score = 28.7 bits (61), Expect = 4.0
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = -2
Query: 386 LTDSPNEDGFDSDVFNP----GLVLGLAANGEHLLLFVGNCALDSQSRFLFNVAHAIFFL 219
+ +S + DG+DSD F+ LG N + L V D++S+ L+N+AH I
Sbjct: 498 VANSDDSDGWDSDEFDDEDDDNATLGEDRNKKQELDLVFP---DARSKKLYNIAHEILTT 554
Query: 218 RPTKSSGLRICQRICF 171
LR+ ++ F
Sbjct: 555 ERAYVKRLRLLDKVFF 570
>SB_25483| Best HMM Match : zf-B_box (HMM E-Value=0.21)
Length = 258
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 214 GRKKKMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSAP 393
G++KK LK D + ++ +KR+R P ST P +K + G+ S
Sbjct: 7 GKRKKSVEELLKEGRDLLDRQEVKSKRKR-KPVRFLFSTDPATGLRNNKGTYKGQKKSKE 65
Query: 394 VKITPE 411
++ PE
Sbjct: 66 KRLNPE 71
>SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 343 KTSESKPSSFGESVSAPVKITPERMAQEIYDEIKR 447
+T ESK S S+S PVK+ E+ +Y+ +K+
Sbjct: 335 ETKESKISRSPISISVPVKVGDEKTKGYVYNVLKK 369
>SB_47465| Best HMM Match : EGF_CA (HMM E-Value=2.4e-08)
Length = 263
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +2
Query: 422 KRFMMRLNDCIDVDSCAWPTALLHHA 499
K F+ C+D+D C +P HA
Sbjct: 142 KGFVREPEGCVDIDECVYPRVCSEHA 167
>SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 243 CSTRHFLFTPNEILWFTYMSTNLF*LRI 160
C +++F+FT N I+W+ + LF L I
Sbjct: 5 CLSKYFIFTLNFIVWYMVVLAVLFTLEI 32
>SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1289
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 565 HVVGHELIDEAVNSLLRIHLMM-SMMQQSRW 476
H+ +L+D N LLR+HL S S+W
Sbjct: 490 HLASRQLLDHLYNRLLRLHLQAESARSPSQW 520
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,646,236
Number of Sequences: 59808
Number of extensions: 402117
Number of successful extensions: 1229
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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