Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0641
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa...    32   0.26 
At2g36720.1 68415.m04505 PHD finger transcription factor, putative     30   1.4  
At1g76810.1 68414.m08938 eukaryotic translation initiation facto...    29   3.3  
At2g46550.1 68415.m05807 expressed protein                             28   4.3  
At5g43740.2 68418.m05348 disease resistance protein (CC-NBS-LRR ...    28   5.7  
At5g43740.1 68418.m05347 disease resistance protein (CC-NBS-LRR ...    28   5.7  
At5g44860.1 68418.m05499 expressed protein strong similarity to ...    27   7.5  
At3g24630.1 68416.m03093 hypothetical protein                          27   10.0 

>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
           family protein predicted proteins, Arabidopsis thaliana
           ; contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 411

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 25/64 (39%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
 Frame = +1

Query: 250 RNLDWESKAQLPTKRRRC-----------SPFAASPSTSPGLKTSESKPSSFGESVSAPV 396
           RNL  + KA LP   RR             P  ASP TSP  K   S PSS    +S  V
Sbjct: 68  RNLSLKRKASLPNYERRLLLSPSVSETSEKPLVASPITSPYWKRCLSLPSSNSAKLSLVV 127

Query: 397 KITP 408
             TP
Sbjct: 128 STTP 131


>At2g36720.1 68415.m04505 PHD finger transcription factor, putative
          Length = 1007

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/67 (23%), Positives = 28/67 (41%)
 Frame = +1

Query: 205 DFVGRKKKMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESV 384
           D+  ++K+  C   K    + S        + CS    S ++    +TS S P+     V
Sbjct: 365 DYASKEKRFTCKRCKGPFPFSSLGHRGFLCKSCSEVETSQASLAATRTSTSAPACITSPV 424

Query: 385 SAPVKIT 405
            + +KIT
Sbjct: 425 KSRLKIT 431


>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
           family protein / eIF-2 family protein similar to IF2
           protein [Drosophila melanogaster] GI:7108770; contains
           Pfam profile PF03144: Elongation factor Tu domain 2
          Length = 1294

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 259 DWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPE 411
           D E +AQ   K+      + +  + P  +   +KP+  G+ + A VK TPE
Sbjct: 618 DEEEEAQPVVKKELKDAISKAHDSEPEAEKPTAKPAGTGKPLIAAVKATPE 668


>At2g46550.1 68415.m05807 expressed protein
          Length = 397

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
 Frame = +1

Query: 220 KKKMACATLKRNLDWESKAQLPTKRRRCSPFAASPS--TSPGLKT-SESKPSSFGESVSA 390
           K ++A    +R+LD+     LPT ++    +  SP    S GL+  S S  +  G S  +
Sbjct: 188 KDELASLVAQRSLDYVENCDLPTPQKMKRSYYGSPRGFDSDGLRDYSVSGQTIKGTSKGS 247

Query: 391 PVKITPERMAQEIYDEIKRLH--RRGQLR 471
             K  PE  ++    + + L   RR Q R
Sbjct: 248 SCKNRPEASSESDLSKSELLEALRRSQTR 276


>At5g43740.2 68418.m05348 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 862

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 229 MACATLKRNLDWESKAQLPTKRRRCSPFAASPST-SPGLK 345
           + C   +  +DWESK     +RR  SP    PST SPG K
Sbjct: 711 LMCNISEIRIDWESK-----ERRELSPTEILPSTGSPGFK 745


>At5g43740.1 68418.m05347 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 862

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 229 MACATLKRNLDWESKAQLPTKRRRCSPFAASPST-SPGLK 345
           + C   +  +DWESK     +RR  SP    PST SPG K
Sbjct: 711 LMCNISEIRIDWESK-----ERRELSPTEILPSTGSPGFK 745


>At5g44860.1 68418.m05499 expressed protein strong similarity to
           unknown protein (gb AAC79135.1)
          Length = 321

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 101 IRFQVTVTSDVLNLKRLFCTFVYPAAATLVPNS 3
           + F  T+++  L LKRLF TF++ +   LV NS
Sbjct: 113 VSFSSTMSAIPLVLKRLFITFLWVSLMMLVYNS 145


>At3g24630.1 68416.m03093 hypothetical protein
          Length = 724

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 20/94 (21%), Positives = 41/94 (43%)
 Frame = +1

Query: 190 IRKPEDFVGRKKKMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSS 369
           + +PED + +        L+ +L   S  Q    +R+  P   +   S  L+   S    
Sbjct: 103 VSRPED-IAKDLLRGALDLEESLAMLSSIQEDDSKRK--PMIRNDGRSD-LRFQRSMSDR 158

Query: 370 FGESVSAPVKITPERMAQEIYDEIKRLHRRGQLR 471
           FGE +   + +     +++ Y+E++++ R   LR
Sbjct: 159 FGERIEKRMMVQENVASKDCYEELRKVIRESFLR 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,667,591
Number of Sequences: 28952
Number of extensions: 276786
Number of successful extensions: 789
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)