Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0639
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    27   1.0  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    26   1.8  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    25   3.1  
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    25   3.1  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   4.1  
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   5.5  
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    24   7.2  

>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 187 MLKYITAKWLYRHSYS 234
           +L+Y T +W+ RHSYS
Sbjct: 13  ILRYSTKRWMNRHSYS 28


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 275 VTQKQNRNAVMNHVFLRSLSFIEKTLHHNYLVRISR 382
           + Q QNR  V N      + F+E +L  N+L+ ++R
Sbjct: 776 IAQGQNRGIVQNFGVQDEVLFLEISLTENWLIFVTR 811


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 275 VTQKQNRNAVMNHVFLRSLSFIEKTLHHNYLVRISR 382
           + Q QNR  V N      + F++ +L  N+L+ I+R
Sbjct: 864 IAQGQNRGIVQNFGVQDEVLFLQISLTENWLIFITR 899


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = +1

Query: 136 YYNLKKSIAKTLDDYVIMLKYITAKWLYRHSYS*NVFSHLAGENILCDSKAESKCSNE-S 312
           + NL +   +T     ++   I    L+  +    V SH     I CDSKA  +  N   
Sbjct: 155 WINLPRLFFRTFRYVFLITSIIEFGGLFASNGKRGVLSHFRSSYITCDSKALDRIVNSIV 214

Query: 313 RFFTILII 336
             F +++I
Sbjct: 215 DIFNVMLI 222


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 321 YDPYHLSRKRFTTIIWFV 374
           Y PYH + K FT  IW +
Sbjct: 696 YTPYHPNEKLFTAGIWTI 713


>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 148 KKSIAKTLDDYVIMLKYITAKWLY 219
           K+S+   L+   I LKY + KWLY
Sbjct: 43  KESVLHFLELIFINLKYQSKKWLY 66


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 280 SKAESKCSNESRFFTILIIYRENASPQLFGS 372
           S+AE  C    +    L  YREN SP L+GS
Sbjct: 139 SEAEKSCDFYGQ---PLHFYRENTSPCLYGS 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,563,985
Number of Sequences: 5004
Number of extensions: 29712
Number of successful extensions: 50
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)