Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0639
         (389 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1228 + 31888350-31892228,31892568-31893298,31893511-318935...    28   2.3  
07_01_0652 + 4895366-4895483,4895661-4896262                           28   3.0  
10_08_0422 - 17796916-17797167,17797328-17797453,17797546-177977...    27   7.0  
06_03_0943 - 26191798-26192244,26192802-26192966,26193515-261936...    26   9.2  

>04_04_1228 + 31888350-31892228,31892568-31893298,31893511-31893586,
            31894089-31894164,31894571-31894656,31895414-31895482,
            31895579-31895588,31895711-31896207
          Length = 1807

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 94   MPVIGLKEG*NRYGFVSTLNYFIELTVGSC 5
            + + G KEG     F+S LN+  EL +  C
Sbjct: 1335 LKIAGCKEGVQTLDFISNLNFLTELHIDDC 1364


>07_01_0652 + 4895366-4895483,4895661-4896262
          Length = 239

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 389 YMNVKYEPNNCGEAFSR*MIRIVKKRDSLLHFDSAFE 279
           YM   Y   +C +   R + ++V+KRDS +H  SAF+
Sbjct: 134 YMECAYYRKDCRK-LRRFISKVVEKRDSAMHACSAFK 169


>10_08_0422 -
           17796916-17797167,17797328-17797453,17797546-17797700,
           17797793-17797907,17798022-17798118,17798274-17798368,
           17798500-17798585,17798689-17798819,17798909-17799090
          Length = 412

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = -1

Query: 359 CG--EAFSR*MIRIVKKRDSLLHFDSAFESHK 270
           CG  EAF+  +  I+ + D +L FD AFE+++
Sbjct: 92  CGQSEAFAAAIFAIIDQGDEVLLFDPAFETYQ 123


>06_03_0943 -
           26191798-26192244,26192802-26192966,26193515-26193668,
           26194153-26194346,26194494-26194695,26194899-26195103,
           26195672-26195843
          Length = 512

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/64 (18%), Positives = 30/64 (46%)
 Frame = +1

Query: 109 NNFVSMTMYYYNLKKSIAKTLDDYVIMLKYITAKWLYRHSYS*NVFSHLAGENILCDSKA 288
           + + + T+++ +L  +I++ +      ++ + A W +    +      L   NILC S +
Sbjct: 346 SQYATQTVFWPSLSSAISEVIFSKNATVRILVAYWTHFIPNTEKYLKSLLYSNILCTSSS 405

Query: 289 ESKC 300
            + C
Sbjct: 406 YNHC 409


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,698,490
Number of Sequences: 37544
Number of extensions: 143913
Number of successful extensions: 205
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)