Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0639
         (389 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46197| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_10896| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_50960| Best HMM Match : Pkinase (HMM E-Value=0)                     26   9.5  

>SB_46197| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 21/79 (26%), Positives = 37/79 (46%)
 Frame = +1

Query: 151 KSIAKTLDDYVIMLKYITAKWLYRHSYS*NVFSHLAGENILCDSKAESKCSNESRFFTIL 330
           K IA  LD   ++ K I+ +   R+  S +V ++  G  +L  S +     N +  + + 
Sbjct: 21  KEIAFNLDSSTMIEKSISLQCDVRYRQSSHVITNETGLRLLQLSSSLELARNSNVRYQLN 80

Query: 331 IIYRENASPQLFGSYFTFI 387
           +    + S QLF  YFT +
Sbjct: 81  LPLPGDISMQLFARYFTLM 99


>SB_10896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 257 RVKIFYVTQKQNRNAVMNHVFLRSLSFIEKTLHHNYL 367
           RV + Y  Q  + N +M+HV  R LS   +  H N+L
Sbjct: 303 RVPLSYRYQLVDVNTIMSHVHTRYLSRFTQKSHDNFL 339


>SB_50960| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 632

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
 Frame = +1

Query: 151 KSIAKTLDDYVIMLKYITAKWLYRHSYS*NVFSHLA-------GENILCDSKAESK 297
           K  A  LD Y   L+Y+  KWL R   +   F H         GE   C SK   K
Sbjct: 55  KPFAAYLDSYYF-LRYLQWKWLERQPVTKKTFRHYRVLGKGGFGEVCACQSKISGK 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,812,094
Number of Sequences: 59808
Number of extensions: 189445
Number of successful extensions: 295
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)