Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0639
         (389 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-1|AAB53982.1|  383|Caenorhabditis elegans Hypothetical ...    28   2.0  
AB275893-1|BAF34316.1|  383|Caenorhabditis elegans hypothetical ...    28   2.0  
Z81489-5|CAB04006.1|  104|Caenorhabditis elegans Hypothetical pr...    26   8.2  
AF068709-17|AAC19257.2|  287|Caenorhabditis elegans Serpentine r...    26   8.2  

>AF002197-1|AAB53982.1|  383|Caenorhabditis elegans Hypothetical
           protein F20H11.5 protein.
          Length = 383

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 253 LAGENILCDSKAESKCSNESRFFTILIIYRENASPQLFG 369
           L   +IL DSK +     ES + +++  YR+ A P+LFG
Sbjct: 105 LVSGHILSDSKTKLDSQRES-YGSLVYNYRDLAEPELFG 142


>AB275893-1|BAF34316.1|  383|Caenorhabditis elegans hypothetical
           protein protein.
          Length = 383

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 253 LAGENILCDSKAESKCSNESRFFTILIIYRENASPQLFG 369
           L   +IL DSK +     ES + +++  YR+ A P+LFG
Sbjct: 105 LVSGHILSDSKTKLDSQRES-YGSLVYNYRDLAEPELFG 142


>Z81489-5|CAB04006.1|  104|Caenorhabditis elegans Hypothetical
           protein C55A1.6 protein.
          Length = 104

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 9/19 (47%), Positives = 17/19 (89%)
 Frame = +2

Query: 317 FLRSLSFIEKTLHHNYLVR 373
           F++S++  ++TL+HNYLV+
Sbjct: 82  FVKSMNEKDQTLYHNYLVK 100


>AF068709-17|AAC19257.2|  287|Caenorhabditis elegans Serpentine
           receptor, class x protein24 protein.
          Length = 287

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 6/20 (30%), Positives = 16/20 (80%)
 Frame = +1

Query: 172 DDYVIMLKYITAKWLYRHSY 231
           DD++++  +IT+ W++ H++
Sbjct: 247 DDWIVLKFFITSLWMFMHAF 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,381,820
Number of Sequences: 27780
Number of extensions: 157122
Number of successful extensions: 288
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)