Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0639
         (389 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46450.1 68415.m05780 cyclic nucleotide-regulated ion channel...    26   7.8  
At2g46440.1 68415.m05779 cyclic nucleotide-regulated ion channel...    26   7.8  

>At2g46450.1 68415.m05780 cyclic nucleotide-regulated ion channel,
           putative (CNGC12) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc3) GI:4581201 from
           [Arabidopsis thaliana]
          Length = 636

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 319 KNVIHYCISILLLSHIKYFHPLND*KRFSYNYVYTAILP*CIL 191
           K V+  C+  L +  +  F PL D +RF + +  T +   C++
Sbjct: 29  KTVLLACVVALAIDPLFLFIPLIDSQRFCFTFDKTLVAVVCVI 71


>At2g46440.1 68415.m05779 cyclic nucleotide-regulated ion channel,
           putative (CNGC11) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc3) GI:4581201 from
           [Arabidopsis thaliana]
          Length = 588

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 319 KNVIHYCISILLLSHIKYFHPLND*KRFSYNYVYTAILP*CIL 191
           K V+  C+  L +  +  F PL D +RF + +  T +   C++
Sbjct: 9   KTVLLACVVALAIDPLFLFIPLIDSQRFCFTFDKTLVAVVCVI 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,590,383
Number of Sequences: 28952
Number of extensions: 133676
Number of successful extensions: 253
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)