Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0638
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0498 + 3734498-3734976,3736176-3736800                           32   0.43 
07_03_1153 + 24398122-24398747,24399326-24399542,24399741-244002...    29   3.0  
03_02_0915 + 12360079-12360095,12360225-12361353                       29   3.0  
01_06_0725 + 31508156-31508277,31508950-31509118,31509311-315094...    28   5.2  
07_01_0724 + 5529642-5531141                                           28   6.9  

>07_01_0498 + 3734498-3734976,3736176-3736800
          Length = 367

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 421 DVCSVSDNGVIGRIAQVIVDALPFLAVGGLARKV 320
           D    +D+GV+  IA  +VD   FLA GG+ R V
Sbjct: 26  DEAPAADDGVVEEIAIPVVDLAAFLASGGIGRDV 59


>07_03_1153 +
           24398122-24398747,24399326-24399542,24399741-24400220,
           24400801-24401007,24401112-24401249,24401317-24401538
          Length = 629

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +2

Query: 479 APDQRPPTD--PITPRPETLPMNQGCGWRNPDGVA 577
           A D  P TD  P+ P+P T     G  WRNP   A
Sbjct: 43  AADAAPATDAAPLPPKPSTGSPFYGENWRNPAAAA 77


>03_02_0915 + 12360079-12360095,12360225-12361353
          Length = 381

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 494 PPTDPITPRPETLPMNQGCGWRNPDGVAFRTTGDVDGETK 613
           PP + I       PM+QG G  + D  A  T  +VD E K
Sbjct: 42  PPAETIVELTTKKPMSQGGGGSSSDSGATSTGAEVDDEEK 81


>01_06_0725 +
           31508156-31508277,31508950-31509118,31509311-31509406,
           31510037-31510097,31510387-31510451,31511104-31511178,
           31511276-31511351,31512140-31512303,31512398-31512421
          Length = 283

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 490 ETANRSHHAQAGDPA-NEPGLRLAEP*RRCLP 582
           E   RSHH    D   N+PG+R  +  RRC P
Sbjct: 53  EEDTRSHHEALLDRTKNKPGIRAVDVRRRCCP 84


>07_01_0724 + 5529642-5531141
          Length = 499

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 440 SGPCSSYIDVCCLAPDQRPPTDPITPRPETLPMNQGCGWRNP 565
           + P ++++   C A D+    DP + RP+ + ++   GW  P
Sbjct: 122 AAPFAAFLADACAAGDREGRPDPFSRRPDWVVVDFAHGWLPP 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,501,097
Number of Sequences: 37544
Number of extensions: 367675
Number of successful extensions: 1341
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)