Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0638
(623 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33) 31 1.0
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17) 30 1.8
SB_17357| Best HMM Match : IMS (HMM E-Value=0) 29 4.1
SB_8135| Best HMM Match : GBP_PSP (HMM E-Value=0.64) 28 7.1
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0) 28 7.1
SB_8102| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_51535| Best HMM Match : W2 (HMM E-Value=4e-29) 27 9.4
SB_41658| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12) 27 9.4
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0) 27 9.4
SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)
Length = 321
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +2
Query: 410 GTNVIDIRVGSGPCSSYIDVCCLAPDQRPPTDPITPRPETLP-MNQGC 550
G N + P Y+ V P +PP P TP+P P + GC
Sbjct: 195 GMNPSQLAQSVVPAPQYVHVPPATPTPKPPPTPKTPKPGAAPKIKNGC 242
>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
Length = 308
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = +2
Query: 401 ITDGTNVIDIRVGSGPCSSYIDVCCLAPDQRPPTDPITPRPETLPMNQGCGWR 559
+T G I R G G +++D+C R D E + GCG R
Sbjct: 60 VTFGHGWISARQGEGHVQTWMDICKTGRRSRSDMDGYLQEREKVTFRHGCGQR 112
>SB_17357| Best HMM Match : IMS (HMM E-Value=0)
Length = 990
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Frame = +2
Query: 356 ECVNYYLCNAANNTIITDGTNVIDIRVGSGPCSSYIDV--CCLAPDQRPPTDPITPRPET 529
+C++ LCN+ I D +N P S +D C PD PP TP P
Sbjct: 694 QCIDNSLCNS----IAGDVSNRQSRDEEKAPLSPDVDKMQCFSPPDSLPPLPKFTPSPTG 749
Query: 530 LPMNQG 547
P G
Sbjct: 750 YPCRTG 755
>SB_8135| Best HMM Match : GBP_PSP (HMM E-Value=0.64)
Length = 225
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 206 INQIFTSAKPPTQLQPVTQPSVADRAPSTLV 298
+NQ+ T+ +P T +PV + + D P+ L+
Sbjct: 125 VNQVMTTGRPRTTTRPVQRQDLPDSDPAPLL 155
>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3255
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 415 CSVSDNGVIGRIAQVIVDALPFLAVGGLARKVIVRR 308
C+VS+N V+G I ++ P L GG+ I+ R
Sbjct: 1903 CNVSENAVVGAIIAELLAVDPDLGTGGVVSYRILTR 1938
>SB_8102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 690
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 33 SRTRKILKPVTSRRALRVRYC*CDVLRIISKDVQASIHRLSRV 161
S+T+K +PV+ R++ DV R++ D ++HR + V
Sbjct: 388 SKTQKNAEPVSERQSASRSTARADVKRLLETDTHVAMHRDTHV 430
>SB_51535| Best HMM Match : W2 (HMM E-Value=4e-29)
Length = 770
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 203 STPDHPVSMFCAHADARKPMNRSL 132
++P HP MFC H KP R +
Sbjct: 263 NSPPHPGPMFCRHPGGGKPAMRQM 286
>SB_41658| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 27.5 bits (58), Expect = 9.4
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +2
Query: 317 DDLSCQTSDGQEGECVNY 370
DD+ CQ++DG + +C +Y
Sbjct: 104 DDIRCQSADGPQRKCASY 121
>SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)
Length = 515
Score = 27.5 bits (58), Expect = 9.4
Identities = 23/79 (29%), Positives = 33/79 (41%)
Frame = +2
Query: 308 STNDDLSCQTSDGQEGECVNYYLCNAANNTIITDGTNVIDIRVGSGPCSSYIDVCCLAPD 487
ST+ SC +DG +G +Y + + NT DG +V C + DV L
Sbjct: 220 STSSTNSCPNTDGVKGG--SYQVRESCPNT---DGVQGGSYQVNE--CIRFNDVIFLCKS 272
Query: 488 QRPPTDPITPRPETLPMNQ 544
Q PP+ P +NQ
Sbjct: 273 QGPPSPSAGPTKPPRSVNQ 291
>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 549
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 535 WQGLRPGRDGICWRSLVGSQTADVDVR-*TRATADSYIDDVCSVSDN 398
W+GL P DGI RS +G +V TR TA C+ SD+
Sbjct: 231 WEGLNPPADGIKIRSWLGDPDWKPEVAGKTRKTAAHPNSRFCAPSDH 277
>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1387
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +2
Query: 230 KPPTQLQPVTQPSVADRAPSTLVPGVSTNDDLSCQTSDGQEGECVNYYLC 379
KP +P T+PS + PS V S + + GQ G+ + C
Sbjct: 945 KPSPDSKPATKPSTDSKTPSAAVASNSDSKACPVECMTGQCGKSCPAHCC 994
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,584,268
Number of Sequences: 59808
Number of extensions: 396240
Number of successful extensions: 1311
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -