Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0637
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0349 - 3082700-3083407                                           30   1.3  
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138...    29   3.0  
05_01_0372 - 2913518-2916562,2916674-2917528                           28   4.0  
08_01_0350 - 3087631-3088461                                           28   5.3  
01_05_0810 - 25435193-25435323,25435434-25436360,25436459-254369...    28   5.3  
07_03_1362 - 26006159-26006461,26006691-26006841,26006975-260072...    27   7.0  

>08_01_0349 - 3082700-3083407
          Length = 235

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 291 AKLATSVFAIVLFFLGNFGITAGAHRLWSHNGYKVKLPL 407
           A+L+   FAI++ FL  F +   + R +SH G  V +PL
Sbjct: 104 AELSVKFFAILVCFLLAFLLNVQSIRYYSHTGLLVNVPL 142


>01_01_0161 -
           1385408-1385566,1385815-1385943,1386164-1386322,
           1387228-1387571,1387641-1387905,1387998-1388075,
           1388207-1388260,1389341-1389361,1389453-1389578,
           1389696-1389863,1389923-1390313,1390629-1390710,
           1391175-1391536,1391806-1392630,1392956-1393476
          Length = 1227

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 381 NGYKVKLPLEI-LLMVFNSIAFQNTIFTWVRDHRLHHKYTDTDADPHN 521
           N Y V+  LE  LL +F  + F NT    V    +H+ +   DA+P N
Sbjct: 736 NEYSVRRALEAYLLWLFGWVMFTNTHGHAVDKGLIHYAWAIVDAEPEN 783


>05_01_0372 - 2913518-2916562,2916674-2917528
          Length = 1299

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +1

Query: 292 QNWLHRFLLLCYSS 333
           Q+W H+ LLLCYSS
Sbjct: 855 QSWRHQMLLLCYSS 868


>08_01_0350 - 3087631-3088461
          Length = 276

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 297 LATSVFAIVLFFLGNFGITAGAHRLWSHNGYKVKLPL 407
           L+   FAI++ FL  F +   + R +SH G  V +PL
Sbjct: 126 LSIKFFAILVCFLVAFLLNVQSIRYYSHTGILVNVPL 162


>01_05_0810 -
           25435193-25435323,25435434-25436360,25436459-25436987,
           25437089-25437190
          Length = 562

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 249 VNS*TYHVHHYNFVFDGRGLG 187
           V S  +H+H YNF   GRG+G
Sbjct: 460 VESHPFHLHGYNFFVVGRGVG 480


>07_03_1362 -
           26006159-26006461,26006691-26006841,26006975-26007212,
           26007293-26007503,26007631-26007755,26007895-26008023,
           26008540-26009326
          Length = 647

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
 Frame = +3

Query: 186 TPGLAHQTQNCSDERDTFSYLHIAGLYGLYLCFTSAKLATSVFAIVL--FFLGNFGITAG 359
           +PG     + C    + FS+  +  +  L +     K +T V AIVL   F G   I   
Sbjct: 229 SPGGKVIGERCGLRFEVFSFYTVDAMVHLQVAMEGKKKSTPVLAIVLPIVFAGLLTIIIV 288

Query: 360 AHRLWSHNGYKVKLPL 407
           +  +W       K PL
Sbjct: 289 SFYIWRKKRLPTKTPL 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,652,479
Number of Sequences: 37544
Number of extensions: 238568
Number of successful extensions: 523
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)