Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0637
         (525 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)              100   1e-21
SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)              28   4.1  
SB_34582| Best HMM Match : PAP2 (HMM E-Value=0.013)                    27   9.5  
SB_14684| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
          Length = 268

 Score = 99.5 bits (237), Expect = 1e-21
 Identities = 38/61 (62%), Positives = 50/61 (81%)
 Frame = +3

Query: 342 FGITAGAHRLWSHNGYKVKLPLEILLMVFNSIAFQNTIFTWVRDHRLHHKYTDTDADPHN 521
           +G+T GAHRLW+H  +K K PL +++M+ NS+A QN IF W RDHR+HHKY++TDADPHN
Sbjct: 18  YGVTIGAHRLWAHRTFKAKWPLRLVIMLMNSMAAQNDIFEWSRDHRVHHKYSETDADPHN 77

Query: 522 A 524
           A
Sbjct: 78  A 78


>SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)
          Length = 618

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 195 LAHQTQNCSDERDTFSYLHIAGLYGLYLCFTSAKLATSVFAI 320
           L +Q  N       F YL++ G+ GL+  F +A ++  VF +
Sbjct: 275 LFNQNSNLCMNGKKFKYLYVTGVAGLFWGFLAAAVSCCVFYV 316


>SB_34582| Best HMM Match : PAP2 (HMM E-Value=0.013)
          Length = 279

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 152 LEVFCFICFIH*IRRHFSNLDFNFIYLSIRLFNFIIQNIY--LKKFCS 15
           LE+  F C+ H I + FSN  F+F+     L +F +   +   K FC+
Sbjct: 62  LELLVFHCYPHQILKTFSNPVFDFVAAVPYLIHFPLPFFFAVYKLFCT 109


>SB_14684| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 152 LEVFCFICFIH*IRRHFSNLDFNFIYLSIRLFNFIIQNIY--LKKFCS 15
           LE+  F C+ H I + FSN  F+F+     L +F +   +   K FC+
Sbjct: 106 LELLVFHCYPHQILKTFSNPVFDFVAAVPYLIHFPLPFFFAVYKLFCT 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,221,977
Number of Sequences: 59808
Number of extensions: 295193
Number of successful extensions: 844
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)