Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0637
         (525 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   1.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   1.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.4  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -2

Query: 437 NTVEDHQQDLEGQFDFVTIMRPQTMSSSCNTKVP 336
           N V  HQ   E + +FV I  P+ +     T  P
Sbjct: 178 NDVVQHQSGSEAEAEFVCIATPEAIELHFTTDHP 211


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 313 LLLCYSSLGTLVLQLELIVCGL 378
           +LLCY     LVL+   IVCG+
Sbjct: 702 ILLCYLVTFALVLRPTDIVCGI 723


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = -2

Query: 116 IRRHFSNLDFNFIYLSIRLFNFIIQNIYLKKFCSEQ 9
           +RRH+S     ++ L+I L    +  ++L+   +E+
Sbjct: 239 LRRHYSMNSTTYVTLTIVLMTMTLMTLWLEPSSTER 274


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 516 EGLHQCPYTCDVA 478
           E   QCPYT D A
Sbjct: 557 ESEEQCPYTVDAA 569


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,347
Number of Sequences: 438
Number of extensions: 2885
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)