Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0635
(533 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 50 2e-07
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 47 2e-06
SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy... 27 1.8
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 27 2.3
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 26 3.1
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 25 5.4
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 7.1
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 25 7.1
SPAC11E3.09 |pyp3||protein-tyrosine phosphatase Pyp3|Schizosacch... 25 9.4
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 25 9.4
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 50.0 bits (114), Expect = 2e-07
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Frame = +2
Query: 56 IEEIPRDE-LNLQEDEML-VPCAHFYKQVYATFGIPFYARFKHNEPFEAVKDRLQKKLDI 229
+E P++E + L+ D+ + + HF+K + IPFY E + +K RLQK+L
Sbjct: 1005 VEVTPKEEQMQLKTDDAVSIVVQHFFKDLSRLHDIPFYFVLLRGETLKDLKKRLQKRLGY 1064
Query: 230 PDKEWEKYNFAVV---TNGRPNYISEGATVNINDFRLSSN-TNLSHPDA 364
D ++ K AV+ + G+P Y+++ V + S+ L HP A
Sbjct: 1065 NDTQFSKVKLAVLQAQSFGKPYYLTDDDEVLYGELEPQSHILGLDHPPA 1113
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 47.2 bits (107), Expect = 2e-06
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Frame = +2
Query: 32 ISPPRLYRIEEIPRDELNLQEDEMLVPCAHFYKQVYATFGIPFYARFKHNEPFEAVKDRL 211
I+P E +P D+L L +E +V HF+K + GIPF K E F K RL
Sbjct: 980 INPAATLVGEVVPLDQLQLYPEEKIVQVHHFHKDIARIHGIPFSFVIKPQEKFIDTKLRL 1039
Query: 212 QKKLDIPDKEWEKYNFAVV--TNGRPNYISE 298
+ P+ + F VV N R Y+++
Sbjct: 1040 AARTQYPESIFSVIKFCVVDFDNNRVVYLND 1070
>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 284
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 161 YARFKHNEPFEAVKDRLQK-KLDIPDKEWEKYNFA 262
YAR N PFE +KD L+ KL + +Y A
Sbjct: 193 YARLLCNLPFEVIKDLLESDKLTVGASSMARYKLA 227
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 26.6 bits (56), Expect = 2.3
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +2
Query: 155 PFYARFKHNEPFEAVKDRLQKKLDIPDKEWEKYNFAVVTNGRPNYISEGA 304
P +A + F A DRLQK + + Y A PNYI A
Sbjct: 258 PSHAMQNPHNSFPASADRLQKNHPVQSSNFNPYTPAPSITVPPNYIPNTA 307
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 113 CAHFYKQVYATFGIPFYARFKHNEPFE 193
C H Y++ Y TFG + F PFE
Sbjct: 25 CNHSYQRDYETFGDSKHTSFSSFAPFE 51
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 113 CAHFYKQVYATFGIPFY 163
C F K+VY TFG F+
Sbjct: 447 CFDFLKEVYGTFGFTFH 463
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 25.0 bits (52), Expect = 7.1
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = -2
Query: 352 RQIRITT*SEIVDIHCRSFAYVIRSAVCHYSKVVLFPFFVGYVEFLL*AIFDSFERFVVF 173
R + + + S I+D + +FA + VV+ PF E L S ++F+
Sbjct: 594 RDLMVNSESPIIDFYPENFALDQNGKTASWEAVVIIPFI---DETRLIDALASKDKFLTE 650
Query: 172 ETRVKRNS 149
E R KRNS
Sbjct: 651 EER-KRNS 657
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 221 LDIPDKEWEKYNFAVVTNGRPNYISEGATVNINDFRLSSNTNLS 352
LD+ ++ + N +V N PN I+DF LS + +
Sbjct: 768 LDLVHRDLKPQNILLVVNNSPNLSKTRVRALISDFGLSKKLDFN 811
>SPAC11E3.09 |pyp3||protein-tyrosine phosphatase
Pyp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 303
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/47 (25%), Positives = 20/47 (42%)
Frame = +2
Query: 17 LDQVIISPPRLYRIEEIPRDELNLQEDEMLVPCAHFYKQVYATFGIP 157
L +++ L + E+ E L +D + HFY + FG P
Sbjct: 151 LSVILVKVYTLTSLNEVQVREFELNKDGVKKKILHFYYNGWPDFGAP 197
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +2
Query: 47 LYRIEEIPRDELNLQEDEMLVPCA 118
++ +E +DE+ + D+ LVPC+
Sbjct: 512 VFSVERTSKDEIEMLLDQGLVPCS 535
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,983,067
Number of Sequences: 5004
Number of extensions: 38912
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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